PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027088121.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 931aa MW: 103282 Da PI: 6.3932

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027088121.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.1	2e-29	612	662	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl+dl++yFs+++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ XP_027088121.1 612 EKSISLQDLRQYFSGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 662 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 931 aa Download sequence
MDELLFDGFW LESTRESNFW EPGPSTTGAL DSPLYYSLTP EINIAHFNSN LDQASISEEA 60 KTTDFVDHKA LDRTQMDEFG TRHRENLDAA LHSASSGQPE GFLVEGSDMN RRLWVGPTGD 120 PTPNTSVRKR LVQAIEYLRK STSDKDALIQ LWVPVKRGGG RVLSTKNQPF SLDPNCRSLA 180 EYRHISRNYQ FAAEEDSKEL VGLPGRVFLK KLPEWTPDVR FFMGEEYPRV NHAQQYNVRG 240 CLALPVFQRG SGTCLGVVEI VSTAQKVNYR PELENVCKAL EAVDLSSSII STSPNMKDCD 300 ESYQLALVDI RSVLKYVCDM NKLPLAQTWA SCSRQGKGGC RHSEENYVRC VSTVDSACYV 360 RDPQVMDFHA ACSEHHLLKA EGLPGGAFMT DQPCFATDIT AFSKTDYPLS HHAKIFGMRA 420 AVAIRVQSIY TKSADFVLEF FLPLDCTDAE DQKQMLNSIF SALQQICHCL HVIADQKVRE 480 ETTIPDDEKP SSSVSKSVKE KTLGFVSPAK ELSLSTSSWV APALDNSGTA KDVAFSLDNH 540 QEDPEEECKL TTQWDNNKAE LHHTPTSPKL IQIQQRSGSK GNVVGSEDVS AVGVHNSMGD 600 RSTGQRRRTK TEKSISLQDL RQYFSGSLKD AAKSIGVCPT TLKRICRQHG ITRWPSRKIK 660 KVGHSLRKLQ LVIDSVQCAD GAIRLSSFYT NFPELNSANL PTPSNLSMPQ GSDHLQELTT 720 QPEGCILSPE TTASKSPSSS GSHSSSSSFC YSTGPMQSLP VHVPSAQDAS SAEECRAALK 780 KTCSDAELHD LVKREETKLL GRSQSQKIFI DDASPDTLPS LPQTSSQILQ SGSLFRVKVN 840 FGEEKVRFSL QPRWGFADLL KEVRRRFSID DLIEIDLKYL DDDNEWVLLT CDADLEECID 900 IHKSSKSTVI RLSIHQGRHF NVGSTSGSHG S

Sequence ? help Back to Top

Protein Sequence Length: 931 aa Download sequence

MDELLFDGFW LESTRESNFW EPGPSTTGAL DSPLYYSLTP EINIAHFNSN LDQASISEEA  60
KTTDFVDHKA LDRTQMDEFG TRHRENLDAA LHSASSGQPE GFLVEGSDMN RRLWVGPTGD  120
PTPNTSVRKR LVQAIEYLRK STSDKDALIQ LWVPVKRGGG RVLSTKNQPF SLDPNCRSLA  180
EYRHISRNYQ FAAEEDSKEL VGLPGRVFLK KLPEWTPDVR FFMGEEYPRV NHAQQYNVRG  240
CLALPVFQRG SGTCLGVVEI VSTAQKVNYR PELENVCKAL EAVDLSSSII STSPNMKDCD  300
ESYQLALVDI RSVLKYVCDM NKLPLAQTWA SCSRQGKGGC RHSEENYVRC VSTVDSACYV  360
RDPQVMDFHA ACSEHHLLKA EGLPGGAFMT DQPCFATDIT AFSKTDYPLS HHAKIFGMRA  420
AVAIRVQSIY TKSADFVLEF FLPLDCTDAE DQKQMLNSIF SALQQICHCL HVIADQKVRE  480
ETTIPDDEKP SSSVSKSVKE KTLGFVSPAK ELSLSTSSWV APALDNSGTA KDVAFSLDNH  540
QEDPEEECKL TTQWDNNKAE LHHTPTSPKL IQIQQRSGSK GNVVGSEDVS AVGVHNSMGD  600
RSTGQRRRTK TEKSISLQDL RQYFSGSLKD AAKSIGVCPT TLKRICRQHG ITRWPSRKIK  660
KVGHSLRKLQ LVIDSVQCAD GAIRLSSFYT NFPELNSANL PTPSNLSMPQ GSDHLQELTT  720
QPEGCILSPE TTASKSPSSS GSHSSSSSFC YSTGPMQSLP VHVPSAQDAS SAEECRAALK  780
KTCSDAELHD LVKREETKLL GRSQSQKIFI DDASPDTLPS LPQTSSQILQ SGSLFRVKVN  840
FGEEKVRFSL QPRWGFADLL KEVRRRFSID DLIEIDLKYL DDDNEWVLLT CDADLEECID  900
IHKSSKSTVI RLSIHQGRHF NVGSTSGSHG S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein