PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027087816.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 208aa    MW: 22847.4 Da    PI: 7.8413
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027087816.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.53.8e-32113169158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep++VNaKQy++Il+RRq+Rak+e+e+k   ksrkpylheSRh hAlrR+Rg+gGrF
  XP_027087816.1 113 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKSRKPYLHESRHLHALRRARGTGGRF 169
                     69***************************9.9*************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MTSSLHNLSD NGEADEQQSH SESLFQSACQ VTGISHPVMT APSMQYAAPP QLGAGITMAQ  60
AGYPYPDPYY RSIFAPYDNK PYAAQPYPTQ PMVHLQLMGI QQAGVPLPSD AVEEPVFVNA  120
KQYHGILRRR QSRAKAESEN KALKSRKPYL HESRHLHALR RARGTGGRFL NAKKDENTLK  180
ENGSGDNPDS DINLTAKKDD HASSESAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.23e-69NF-YA family protein