PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027087508.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 693aa MW: 77140.6 Da PI: 4.3959

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027087508.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.4	2.5e-11	540	581	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el+++av+q+G++ + I + ++ gRt+ q+k+++ k XP_027087508.1 540 RWSKQDTELFYEAVRQFGTD-LSMIQQLFP-GRTRRQIKLKYKK 581 8*****************.*****.*********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence
MSRKGKTSCF RLLTVDDRSF GVVNCTSQHL DSSGNGNPIA SLGPVMDIFV PDSNEDWHSC 60 FEKTMGENSD IFIGLESLGD FLPDSATVLD NSIPSSEARN VHISDSENTE GGLADPLIPN 120 ISSQSEFSTA QDPLAGTDRI VVTSGGCSDD RNLDTEEMET YQVDSLDMSE LTTSSGRRKF 180 QPKSKMQAHR QGSGSSIPDL DMVDPVLCQQ DLESVPSEVD VVDCRSVPAS PTDDILDVSS 240 AGPNQTAPAQ LTSEVLLDAE PSNLMGASYQ EDGILVDHSE AVLELPGKLA SRRAKSGKGK 300 THIALDHSPK KQLASKSSET NVGGRSLRRR TKRKNAHNLV DESEDEDLED RDLPAESLSN 360 SVLNEDDNTD EEFQLEDDSQ TKKSQKKCKK PTFDKEKPAR KRKKDTEASE QAVKAAPKKF 420 SHSTRRRRVD KALLETPEDE IDFQKVPLRD LILLAEYRER MAKKEATTTP GPLSNQSNGN 480 CSARDNEDGA AGTSEQYGED EAFASEQGRE ANDEQESPQV EENSGYFNYQ TYMDKTPIAR 540 WSKQDTELFY EAVRQFGTDL SMIQQLFPGR TRRQIKLKYK KEERQHPLML REALSTRSKD 600 HSHFELVIER LKQMAAEEKQ NSSTADSVNL MGEEEAEEET LETNEMDEEA KSEQIDGGVL 660 GNMEPDISET QSPEKSYDSE EELLRWSQYK SEI

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence

MSRKGKTSCF RLLTVDDRSF GVVNCTSQHL DSSGNGNPIA SLGPVMDIFV PDSNEDWHSC  60
FEKTMGENSD IFIGLESLGD FLPDSATVLD NSIPSSEARN VHISDSENTE GGLADPLIPN  120
ISSQSEFSTA QDPLAGTDRI VVTSGGCSDD RNLDTEEMET YQVDSLDMSE LTTSSGRRKF  180
QPKSKMQAHR QGSGSSIPDL DMVDPVLCQQ DLESVPSEVD VVDCRSVPAS PTDDILDVSS  240
AGPNQTAPAQ LTSEVLLDAE PSNLMGASYQ EDGILVDHSE AVLELPGKLA SRRAKSGKGK  300
THIALDHSPK KQLASKSSET NVGGRSLRRR TKRKNAHNLV DESEDEDLED RDLPAESLSN  360
SVLNEDDNTD EEFQLEDDSQ TKKSQKKCKK PTFDKEKPAR KRKKDTEASE QAVKAAPKKF  420
SHSTRRRRVD KALLETPEDE IDFQKVPLRD LILLAEYRER MAKKEATTTP GPLSNQSNGN  480
CSARDNEDGA AGTSEQYGED EAFASEQGRE ANDEQESPQV EENSGYFNYQ TYMDKTPIAR  540
WSKQDTELFY EAVRQFGTDL SMIQQLFPGR TRRQIKLKYK KEERQHPLML REALSTRSKD  600
HSHFELVIER LKQMAAEEKQ NSSTADSVNL MGEEEAEEET LETNEMDEEA KSEQIDGGVL  660
GNMEPDISET QSPEKSYDSE EELLRWSQYK SEI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	328	334	RRRTKRK
2	400	404	RKRKK
3	400	405	RKRKKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	4e-50	MYB_related family protein