PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027087498.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 544aa    MW: 60566.4 Da    PI: 5.8213
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027087498.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.82.9e-1291745441374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cAeavs+ + + aq l+++l++++s +gdp+qRl ay++e+L+arl++s+s +yk+l+++e +     e +++++++++++P++kf++
  XP_027087498.1 174 LKQLLLACAEAVSNAEISTAQGLMNELEQRVSISGDPIQRLSAYMMEGLRARLLSSGSIIYKKLKCKEPT---GPELMSYMHFLYQICPYFKFAY 265
                     689******************************************************************9...99******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN  I ea+e+e+r+H+iDf + qG QW++++qaLa Rp+gpp +R+Tgv++++s+  +   l  +g+rLa++A+++gvpfef+  +a +  +
  XP_027087498.1 266 MSANVVIGEAMEHENRIHVIDFCLAQGSQWVSFIQALAHRPGGPPYIRVTGVDDSQSVhaRGGGLDVVGQRLANVAASCGVPFEFHG-AAISGCE 359
                     ******************************************************9998889999***********************.888999* PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +ele+L+v++gEalaVn+ ++lh+++desv++ ++rd++L+l+kslsPkvv++veqe+++n+++F  rf+e+leyy+a+f+s++a+ pr++++ri
  XP_027087498.1 360 VELENLKVRHGEALAVNFPYMLHHMPDESVNTMNHRDRLLRLIKSLSPKVVTLVEQESNTNTAPFYPRFCETLEYYTAMFESIDATRPRNDKQRI 454
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + E+++++r+ivn+vacega+r+erhe ++kWr rl++aGF p pls ++ + ++ +l++++ + yr+ +++g+l+lgWk+r+L ++SaWr
  XP_027087498.1 455 SAEEHCIARDIVNIVACEGADRVERHELFGKWRLRLTMAGFVPCPLSFSVGNAIRDMLKEYSPN-YRLVDRDGALYLGWKNRALATCSAWR 544
                     **************************************************************55.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    
MQASQASQTS EAIHMLYHQP FQQIESYNLS PFQVLNSNVC ADNSSQGAQV SFQACNEQFA  60
TLESLPMTDY VNSDSPSTVS ISSNRSPFSP QCSQSYMSDV HHSSDNTYGS PLSGSSGVDD  120
SNELRNVLRE LEIKLMEESE IDDSSSCSVN NVVGQPVFST RGNRVVQMAH TMDLKQLLLA  180
CAEAVSNAEI STAQGLMNEL EQRVSISGDP IQRLSAYMME GLRARLLSSG SIIYKKLKCK  240
EPTGPELMSY MHFLYQICPY FKFAYMSANV VIGEAMEHEN RIHVIDFCLA QGSQWVSFIQ  300
ALAHRPGGPP YIRVTGVDDS QSVHARGGGL DVVGQRLANV AASCGVPFEF HGAAISGCEV  360
ELENLKVRHG EALAVNFPYM LHHMPDESVN TMNHRDRLLR LIKSLSPKVV TLVEQESNTN  420
TAPFYPRFCE TLEYYTAMFE SIDATRPRND KQRISAEEHC IARDIVNIVA CEGADRVERH  480
ELFGKWRLRL TMAGFVPCPL SFSVGNAIRD MLKEYSPNYR LVDRDGALYL GWKNRALATC  540
SAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein