PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027087421.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 856aa MW: 94723.7 Da PI: 6.8642

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027087421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.2	1.8e-29	537	587	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl+dl++yFs+++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ XP_027087421.1 537 EKSISLQDLRQYFSGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 587 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 856 aa Download sequence
MDEFGTRHRE NLDAALHSAS SGQPEGFLVE GSDMNRRLWV GPTGDPTPNT SVRKRLVQAI 60 EYLRKSTSDK DALIQIWVPV TRGGGRVLST KNQPFSLDPN CRSLAEYRHI SRNYQFAAEE 120 DSKELVGLPG RVFLKKLPEW TPDVRFFKGE EYPRVNHAQQ YNVRGCLALP VFQRGSGTCL 180 GVVEIVSTAQ KVNYGPELEN ICKALEAVDL SSSIISTSPN MKDCDESYQL ALVDIRSVLK 240 YVCDMNKLPL AQTWASCIRQ GKGGCRHSEE NYVRCVSTVD SACYVRDPQV MDFHAACSEH 300 HLLKAEGLPG GAFMTDQPCF ATDITAFSKT DYPLSHHAKI FGMRAAVAIR VQSIYTKSAD 360 FVLEFFLPLD CTDAEDQKQM LNSIFSALQQ ICHCLHVITD QKVREETTIP DDEKPSSSVS 420 KSVKEKTLGF VSPAKELSLS TSSWVAPALD NSETVKDVAF SLDNHQEDPE EECKLTTQWD 480 NNKAELHHTP TSPKLIQIPQ RSGLKGHVVG SEDVSAVGGH NSMGDRSTGQ RRRTKTEKSI 540 SLQDLRQYFS GSLKDAAKSI GVCPTTLKRI CRQHGITRWP SRKIKKVGHS LRKLQLVIDS 600 VQCAEGAIQL SSFYTNFPEL NSANLPTPSN LSMSQGSDHL QKLTTQPEGC ILSPETTASK 660 SPSSSGSHSS SSSFCYSTGP MQSIPVHAPS AQDASSAEEC RAALKKTCSD AELHDLVKRE 720 ETKLLGRSQS QKIFIDDVSP DTLPSFPQTS SQILRSGSLF RVKVNFGEEK VRFSLQPHWG 780 FADLLKEVRG RFSIDDLIEI DLKYLDDDNE WVLLTCDADL EECIDIHKSS KSTVIRLSIH 840 QGRHFNVGST SGSHGS

Sequence ? help Back to Top

Protein Sequence Length: 856 aa Download sequence

MDEFGTRHRE NLDAALHSAS SGQPEGFLVE GSDMNRRLWV GPTGDPTPNT SVRKRLVQAI  60
EYLRKSTSDK DALIQIWVPV TRGGGRVLST KNQPFSLDPN CRSLAEYRHI SRNYQFAAEE  120
DSKELVGLPG RVFLKKLPEW TPDVRFFKGE EYPRVNHAQQ YNVRGCLALP VFQRGSGTCL  180
GVVEIVSTAQ KVNYGPELEN ICKALEAVDL SSSIISTSPN MKDCDESYQL ALVDIRSVLK  240
YVCDMNKLPL AQTWASCIRQ GKGGCRHSEE NYVRCVSTVD SACYVRDPQV MDFHAACSEH  300
HLLKAEGLPG GAFMTDQPCF ATDITAFSKT DYPLSHHAKI FGMRAAVAIR VQSIYTKSAD  360
FVLEFFLPLD CTDAEDQKQM LNSIFSALQQ ICHCLHVITD QKVREETTIP DDEKPSSSVS  420
KSVKEKTLGF VSPAKELSLS TSSWVAPALD NSETVKDVAF SLDNHQEDPE EECKLTTQWD  480
NNKAELHHTP TSPKLIQIPQ RSGLKGHVVG SEDVSAVGGH NSMGDRSTGQ RRRTKTEKSI  540
SLQDLRQYFS GSLKDAAKSI GVCPTTLKRI CRQHGITRWP SRKIKKVGHS LRKLQLVIDS  600
VQCAEGAIQL SSFYTNFPEL NSANLPTPSN LSMSQGSDHL QKLTTQPEGC ILSPETTASK  660
SPSSSGSHSS SSSFCYSTGP MQSIPVHAPS AQDASSAEEC RAALKKTCSD AELHDLVKRE  720
ETKLLGRSQS QKIFIDDVSP DTLPSFPQTS SQILRSGSLF RVKVNFGEEK VRFSLQPHWG  780
FADLLKEVRG RFSIDDLIEI DLKYLDDDNE WVLLTCDADL EECIDIHKSS KSTVIRLSIH  840
QGRHFNVGST SGSHGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein