PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027087419.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 954aa MW: 105517 Da PI: 6.1208

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027087419.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93	2.1e-29	635	685	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl+dl++yFs+++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ XP_027087419.1 635 EKSISLQDLRQYFSGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 685 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 954 aa Download sequence
MGDGAFTAND SGTLSDNVLD FDLMDELLFD GFWLESTRES NFWEPGPSTT GALDSPLYYS 60 LTPEINIAHF NSNLDQASIS EEAKTTDFVD HKALGRTQMD EFGTRHRENL DAALHSASSG 120 QPEGFLVEGS DMNRRLWVGP TGDPTPNTSV RKRLVQAIEY LRKSTSDKDA LIQIWVPVTR 180 GGGRVLSTKN QPFSLDPNCR SLAEYRHISR NYQFAAEEDS KELVGLPGRV FLKKLPEWTP 240 DVRFFKGEEY PRVNHAQQYN VRGCLALPVF QRGSGTCLGV VEIVSTAQKV NYGPELENIC 300 KALEAVDLSS SIISTSPNMK DCDESYQLAL VDIRSVLKYV CDMNKLPLAQ TWASCIRQGK 360 GGCRHSEENY VRCVSTVDSA CYVRDPQVMD FHAACSEHHL LKAEGLPGGA FMTDQPCFAT 420 DITAFSKTDY PLSHHAKIFG MRAAVAIRVQ SIYTKSADFV LEFFLPLDCT DAEDQKQMLN 480 SIFSALQQIC HCLHVITDQK VREETTIPDD EKPSSSVSKS VKEKTLGFVS PAKELSLSTS 540 SWVAPALDNS ETVKDVAFSL DNHQEDPEEE CKLTTQWDNN KAELHHTPTS PKLIQIPQRS 600 GLKGHVVGSE DVSAVGGHNS MGDRSTGQRR RTKTEKSISL QDLRQYFSGS LKDAAKSIGV 660 CPTTLKRICR QHGITRWPSR KIKKVGHSLR KLQLVIDSVQ CAEGAIQLSS FYTNFPELNS 720 ANLPTPSNLS MSQGSDHLQK LTTQPEGCIL SPETTASKSP SSSGSHSSSS SFCYSTGPMQ 780 SIPVHAPSAQ DASSAEECRA ALKKTCSDAE LHDLVKREET KLLGRSQSQK IFIDDVSPDT 840 LPSFPQTSSQ ILRSGSLFRV KVNFGEEKVR FSLQPHWGFA DLLKEVRGRF SIDDLIEIDL 900 KYLDDDNEWV LLTCDADLEE CIDIHKSSKS TVIRLSIHQG RHFNVGSTSG SHGS

Sequence ? help Back to Top

Protein Sequence Length: 954 aa Download sequence

MGDGAFTAND SGTLSDNVLD FDLMDELLFD GFWLESTRES NFWEPGPSTT GALDSPLYYS  60
LTPEINIAHF NSNLDQASIS EEAKTTDFVD HKALGRTQMD EFGTRHRENL DAALHSASSG  120
QPEGFLVEGS DMNRRLWVGP TGDPTPNTSV RKRLVQAIEY LRKSTSDKDA LIQIWVPVTR  180
GGGRVLSTKN QPFSLDPNCR SLAEYRHISR NYQFAAEEDS KELVGLPGRV FLKKLPEWTP  240
DVRFFKGEEY PRVNHAQQYN VRGCLALPVF QRGSGTCLGV VEIVSTAQKV NYGPELENIC  300
KALEAVDLSS SIISTSPNMK DCDESYQLAL VDIRSVLKYV CDMNKLPLAQ TWASCIRQGK  360
GGCRHSEENY VRCVSTVDSA CYVRDPQVMD FHAACSEHHL LKAEGLPGGA FMTDQPCFAT  420
DITAFSKTDY PLSHHAKIFG MRAAVAIRVQ SIYTKSADFV LEFFLPLDCT DAEDQKQMLN  480
SIFSALQQIC HCLHVITDQK VREETTIPDD EKPSSSVSKS VKEKTLGFVS PAKELSLSTS  540
SWVAPALDNS ETVKDVAFSL DNHQEDPEEE CKLTTQWDNN KAELHHTPTS PKLIQIPQRS  600
GLKGHVVGSE DVSAVGGHNS MGDRSTGQRR RTKTEKSISL QDLRQYFSGS LKDAAKSIGV  660
CPTTLKRICR QHGITRWPSR KIKKVGHSLR KLQLVIDSVQ CAEGAIQLSS FYTNFPELNS  720
ANLPTPSNLS MSQGSDHLQK LTTQPEGCIL SPETTASKSP SSSGSHSSSS SFCYSTGPMQ  780
SIPVHAPSAQ DASSAEECRA ALKKTCSDAE LHDLVKREET KLLGRSQSQK IFIDDVSPDT  840
LPSFPQTSSQ ILRSGSLFRV KVNFGEEKVR FSLQPHWGFA DLLKEVRGRF SIDDLIEIDL  900
KYLDDDNEWV LLTCDADLEE CIDIHKSSKS TVIRLSIHQG RHFNVGSTSG SHGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein