PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027086802.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 317aa MW: 36417.8 Da PI: 5.9505

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027086802.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52	1.3e-16	30	116	6	98
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ v +g+l lpk+f++e+g + ++l+ +sg ++v + +k ++ +l++GW++F++ + L g f+ Fk++g+sef v +f+ XP_027086802.1 30 ITQPVVDEGQLGLPKNFVKEYGDE--ICSSVRLNVPSGGIFRVGI--EKDENMLWLRDGWQRFAEHHSLTFGYFLWFKYNGNSEF--DVAIFD 116 5677888999*********865..4449***********..********************************9999..888876 PP
2	B3	55.3	1.2e-17	217	308	4	97
E-..-HHHHTT-E.E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 4 vltpsdvlksgrl.vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++++++l ++ + +p +f +++ +k + l+d++g++W+v +i ++++ + l+kGW F+++++L++gD++vF++++++ +v++ XP_027086802.1 217 LTMKEYNLGRCYIvHVPAEFSSTYlR-T--DKKSVELQDSDGNKWTVGVI-VRYGRVISLSKGWCYFCRDHKLCSGDVCVFEVIKSRPVVIKVTI 307 5567777777655379**999953.3..3356***********5.6666789**********************9987666666666 PP E CS B3 97 f 97 f XP_027086802.1 308 F 308 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MEDSDNQEGS TMENNRDWRG SDASSFYRII TQPVVDEGQL GLPKNFVKEY GDEICSSVRL 60 NVPSGGIFRV GIEKDENMLW LRDGWQRFAE HHSLTFGYFL WFKYNGNSEF DVAIFDLTAT 120 EIDYQCCSNN SKKFNPVAET TVPEPEHDAF CSAKTDDRHP IEISSSSETE EVEIRDVTTD 180 SGNPRSIRRR SRRRGKKISE HDVVTRLFKS DNPYFSLTMK EYNLGRCYIV HVPAEFSSTY 240 LRTDKKSVEL QDSDGNKWTV GVIVRYGRVI SLSKGWCYFC RDHKLCSGDV CVFEVIKSRP 300 VVIKVTIFPA RESVEVK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	197	RRSRRRGKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-25	B3 family protein