PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027086520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ARF
Protein Properties Length: 835aa    MW: 92093 Da    PI: 6.9503
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027086520.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.5e-23179280199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + ++
  XP_027086520.1 179 FCKTLTASDTSTHGGFSVPRRAAEDCfpplnyE-EPRPSQELVARDIHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEG 270
                     99****************************954.445678*************************************************..4489 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     + l+++++r+
  XP_027086520.1 271 GDLRLGIRRA 280
                     999**99986 PP

2Auxin_resp1011.6e-33305386182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +a+a+s++++F+++Y+ ras+++F+v+++k++k++++++ vG+Rfk++++ ++++ rr+sG+v+gv d+dp rWpnSkWr+L
  XP_027086520.1 305 VANAVSSNTAFKIFYSTRASHADFIVPYQKYVKSINNQIPVGTRFKISIDLDNAPDRRYSGVVTGVGDVDPHRWPNSKWRCL 386
                     689******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    
MEIDLNHAIV ESSEVEKNAN ACSCNGECDK GGCGFGCVYC SLSTSTSSCS SNASSSNPPP  60
PSKIFMELWY ACAGPVTSLP KKGNVVVYFP QGHLEQAASV SSFPALEVPS FDLQPQIFCK  120
VLEVELLANK ENDEVYTQLT LLPISEVLAL RSGGKDHEEA GTEEERTEAV PIKSTSHMFC  180
KTLTASDTST HGGFSVPRRA AEDCFPPLNY EEPRPSQELV ARDIHGVEWR FRHIYRGQPR  240
RHLLTTGWSI FVSQKNLVSG DAVLFLRGEG GDLRLGIRRA AGLRNGLSEL VIKSQNAYPR  300
VLAPVANAVS SNTAFKIFYS TRASHADFIV PYQKYVKSIN NQIPVGTRFK ISIDLDNAPD  360
RRYSGVVTGV GDVDPHRWPN SKWRCLMVRW EEDASNRHER VSPWEIDFSA SFANMSIQTS  420
PRMKKLRTCM QADVQNSSRN GADLLSPMPY TNNVSGANKA VMTPPVWNGY IPGQVPLWDF  480
AESARSGKVL QGQENLGLAS PLYGGDKINR QLDFEMHPVA HQQFVSNGME KANYSDFSRS  540
QPSITYSGSM ETNSFPKVLQ GQEICSLKSL TGKTELNPSG WRKPELGGNI LNINQRSFPS  600
CYPLASEGIR NVVFPYNGVY KAGQDPVMLS YMANRERENH VLNSKSFRDG PTKEDGRHLS  660
LANEPKAFEK KSIVPTTGTP LNNKKDENKG AGSVCKLFGV SLTEEAPASS SQSSSRRSCT  720
KVHKQGNLVG RAIDLSKLKS YDDLLVELEK LFSMEGMLRE PGKGWRVLYT DSEKDMMVVG  780
DDPWPEFCDV VSKIHILTIE EVQKMSIGVL SDETRSCLEE SPAVMDGSKS SVTAP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0ARF family protein