PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027086516.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | ARF | ||||||||
Protein Properties | Length: 836aa MW: 92164 Da PI: 6.9503 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.1 | 3.5e-23 | 179 | 280 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + ++ XP_027086516.1 179 FCKTLTASDTSTHGGFSVPRRAAEDCfpplnyE-EPRPSQELVARDIHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEG 270 99****************************954.445678*************************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 + l+++++r+ XP_027086516.1 271 GDLRLGIRRA 280 999**99986 PP | |||||||
2 | Auxin_resp | 101 | 1.6e-33 | 305 | 386 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+s++++F+++Y+ ras+++F+v+++k++k++++++ vG+Rfk++++ ++++ rr+sG+v+gv d+dp rWpnSkWr+L XP_027086516.1 305 VANAVSSNTAFKIFYSTRASHADFIVPYQKYVKSINNQIPVGTRFKISIDLDNAPDRRYSGVVTGVGDVDPHRWPNSKWRCL 386 689******************************************************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 836 aa Download sequence |
MEIDLNHAIV ESSEVEKNAN ACSCNGECDK GGCGFGCVYC SLSTSTSSCS SNASSSNPPP 60 PSKIFMELWY ACAGPVTSLP KKGNVVVYFP QGHLEQAASV SSFPALEVPS FDLQPQIFCK 120 VLEVELLANK ENDEVYTQLT LLPISEVLAL RSGGKDHEEA GTEEERTEAV PIKSTSHMFC 180 KTLTASDTST HGGFSVPRRA AEDCFPPLNY EEPRPSQELV ARDIHGVEWR FRHIYRGQPR 240 RHLLTTGWSI FVSQKNLVSG DAVLFLRGEG GDLRLGIRRA AGLRNGLSEL VIKSQNAYPR 300 VLAPVANAVS SNTAFKIFYS TRASHADFIV PYQKYVKSIN NQIPVGTRFK ISIDLDNAPD 360 RRYSGVVTGV GDVDPHRWPN SKWRCLMVRW EEDASNRHER VSPWEIDFSA SFANMSIQTS 420 PRMKKLRTCM QADVQNSSRN GADLLSPMPY TNNVSGANKA VMTPPVWNGY IPAGQVPLWD 480 FAESARSGKV LQGQENLGLA SPLYGGDKIN RQLDFEMHPV AHQQFVSNGM EKANYSDFSR 540 SQPSITYSGS METNSFPKVL QGQEICSLKS LTGKTELNPS GWRKPELGGN ILNINQRSFP 600 SCYPLASEGI RNVVFPYNGV YKAGQDPVML SYMANREREN HVLNSKSFRD GPTKEDGRHL 660 SLANEPKAFE KKSIVPTTGT PLNNKKDENK GAGSVCKLFG VSLTEEAPAS SSQSSSRRSC 720 TKVHKQGNLV GRAIDLSKLK SYDDLLVELE KLFSMEGMLR EPGKGWRVLY TDSEKDMMVV 780 GDDPWPEFCD VVSKIHILTI EEVQKMSIGV LSDETRSCLE ESPAVMDGSK SSVTAP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | ARF family protein |