PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027086393.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 175aa MW: 19961.5 Da PI: 8.4539 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 35.8 | 1.8e-11 | 81 | 162 | 18 | 99 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlr.swlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 + ++P+ ri+ki+k + +++ ea l ka e f lel r ++ a +++ + +a++v++ + fdfl di+p+ XP_027086393.1 81 QCKFPMNRIQKIMKDHDASARLAQEAIFLANKASEKF-LELYCReAYACAFLDHKKQVSYDHLASVVSKRKRFDFLSDIIPQR 162 779*********************************9.5777773788888999999***********************985 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 175 aa Download sequence |
MGENWEKWVD ENKKSGGAGS SSTPKEVEKK KSKGKKKAVA EEEEREQESS GKKEMKNSKK 60 KKNMVAVEEG DDENEREEGP QCKFPMNRIQ KIMKDHDASA RLAQEAIFLA NKASEKFLEL 120 YCREAYACAF LDHKKQVSYD HLASVVSKRK RFDFLSDIIP QRVKAEDALA EVSDK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07980.1 | 1e-27 | NF-YC family protein |