PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027086110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 238aa MW: 27641 Da PI: 10.0688 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.8 | 1.6e-29 | 35 | 85 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++gklye+ss XP_027086110.1 35 KRIENAASRQVTFSKRRRGLLKKAFELSVLCDAEVALIIFSPSGKLYEFSS 85 79***********************************************96 PP | |||||||
2 | K-box | 71.4 | 2.7e-24 | 108 | 197 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +++++ ++e+a L+k++e L++++R+llG++L++ s+ eLqq+e qLe+sl+ iRs+K+ l+ eqi++l++ ek l++en +Lr+k+ XP_027086110.1 108 MALQHSQNFEEEVAILRKKLEILEETKRKLLGDGLDTSSFDELQQIEGQLERSLNIIRSRKSLLFWEQIDHLKEEEKILRKENAELREKV 197 566899**********************************************************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence |
MLCICSNKWV VGGFNFGPRL LSKIVRMVRG KTQIKRIENA ASRQVTFSKR RRGLLKKAFE 60 LSVLCDAEVA LIIFSPSGKL YEFSSSSATS TIERYQKNIR NLCPSEKMAL QHSQNFEEEV 120 AILRKKLEIL EETKRKLLGD GLDTSSFDEL QQIEGQLERS LNIIRSRKSL LFWEQIDHLK 180 EEEKILRKEN AELREKVHLQ YEQQRLGQSI SRQPLSLRQV KEIETRLFIG LPESSNYP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 5e-68 | MIKC_MADS family protein |