PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027085940.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ARF
Protein Properties Length: 711aa    MW: 77644 Da    PI: 7.2348
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027085940.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.84.9e-24117218199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +
  XP_027085940.1 117 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVVAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFL--RAE 207
                     89****************************997556555..8************************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  XP_027085940.1 208 SGDLCVGIRRA 218
                     9999****997 PP

2Auxin_resp1102.4e-36287369283
      Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ a ++++F+vvY+Prast+eF vk+++v++a++v++++GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  XP_027085940.1 287 ASFAVKGQPFDVVYYPRASTPEFFVKASSVSSAMRVQWCAGMRFKMPFETEDSSRISWfMGTIAAVQFADPIRWPNSPWRLLQ 369
                     6677899**************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    
MKEMVEKSLD SQLWHACAGG MVQMPVVNSR VYYFPQGHAE HTLANVDFAG MPRVQPLILC  60
RVAAVKFLAD PETDEVYARV RLVPIGNNEG CYEFDDDGGG VLGGNGPDSS ADKPASFAKT  120
LTQSDANNGG GFSVPRYCAE TIFPRLDYTA DPPVQTVVAK DVHGETWKFR HIYRGTPRRH  180
LLTTGWSTFV NQKKLIAGDS IVFLRAESGD LCVGIRRAKR GGIGGPESPS GWNSAAGNYG  240
GFSMFLREDE NKLMRTGSAG NLNSPGNGGG ALKGRGRVRA ESVIEAASFA VKGQPFDVVY  300
YPRASTPEFF VKASSVSSAM RVQWCAGMRF KMPFETEDSS RISWFMGTIA AVQFADPIRW  360
PNSPWRLLQV TWDEPDLLQN VKRVSPWLVE LVSNMPVIHL SPFSPARKKL RLLQHSDFSL  420
DGQFPMPSFS GNPLGPSSPL CCLSDNIPAG IQGARHAQLG VQLADLHLSN KMHLGLISPS  480
FQQLDPLAKS SDGIIRGHLD SSDDISCLLT MGNSSQKLEK TTSVRTPRFL LFGQPILTEQ  540
QMSHGYNSDA VSQVGKSSAC GISLKAEDVS LDQKVHMDSL PNTGLFWNQG CHAAELGLDT  600
GHCKVFLESE DVGRTLDLSV LGSYEELYKK LTSMFMIERS ELEGHVFYRD ATGALKQTGD  660
ESFSEFVRTA KRLTIFKNPG NSVGRKWLTG LPTAERGLDS SNQAGPLSIF A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0ARF family protein