PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027085855.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 902aa MW: 99030.4 Da PI: 5.0744

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027085855.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28	5e-09	843	895	3	46
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 +WT+ E+e+l+++v++l ++ Wk I + g gRt ++k++w++ XP_027085855.1 843 PWTKAEEEKLKEGVQRLSSPhdrsiPWKQILEFGGdvfqRGRTTIDLKDKWRN 895 8***************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 902 aa Download sequence
MASEIPVPST VAWSWVIEAL SRSKQADTSL LIDIIKKAPE VSDDELGKNC REVVSLRILE 60 SLIVKGNQNK NKDAATVGQK LELDPSNNCE DVLRQISEMS AMDLTAVAPE MLNGDVQPFI 120 VHKRASLPKP ALQKLKDAIL EGSHSILSSL KERSGLTVTT QCNDDIPVNG GNSNVLAQRL 180 EDCSINNRVT LPYGNAGSPT LDNMDDESPE NLPDTNLLPA KRKTAAMRSE IVEIQTDGDQ 240 TTLDDCCTSH VQATKKFKQK ANFTEDTVVQ NAIAPTTHGP STTLSEGVVR YIEKEGCNSK 300 KEVQCGSSTP QNVDDDLEGN FPESNSIPAK RNRTAIAAEN SEGKTLKDQI PLGDGCDIRG 360 EVVKKFKQDG NSMMDDIDED TVASPVHGLM KFSSEGTVKH IEKEGCNLET EVQVGGVESN 420 GSPHGDDDQH CQLKRIAQSS HAFHQDHLVC DLQVPHDNAK VAELHAELDG QNNSVDETNG 480 HDQGFELQTE NATSLAMGVM EKNNSPENPV QNFEGNFQLS FGGSGSKDDM QHNPDFDMTS 540 DSDDYRDERM DIALKKDALL SSQCTYSQDS FATQAKYCVK CNKEGQLLVC SSDTCQLAVH 600 SSCLPSAAHF DGNGKFYCPF CAYSRAISEY MQVKRKASFA RKDLASFIGV QTVCQQKKAT 660 MKLGRESRNE LQKNEGNNSE DFVNKVSDSH CGVKMGNKHQ SEPPLSCSSD HSHSGEKVVS 720 PSDGMPNTLV SGNLERKYME PQCQLLGVQV EQPVVAHPVH GSDVDCKEAH MADRNEGNAG 780 AEGKKVSEIP ESALPQEPVC GPISESSEED NEKSVRSYSI RLRRPIKNYT FPAIPQLRRK 840 ILPWTKAEEE KLKEGVQRLS SPHDRSIPWK QILEFGGDVF QRGRTTIDLK DKWRNICKGG 900 PR

Sequence ? help Back to Top

Protein Sequence Length: 902 aa Download sequence

MASEIPVPST VAWSWVIEAL SRSKQADTSL LIDIIKKAPE VSDDELGKNC REVVSLRILE  60
SLIVKGNQNK NKDAATVGQK LELDPSNNCE DVLRQISEMS AMDLTAVAPE MLNGDVQPFI  120
VHKRASLPKP ALQKLKDAIL EGSHSILSSL KERSGLTVTT QCNDDIPVNG GNSNVLAQRL  180
EDCSINNRVT LPYGNAGSPT LDNMDDESPE NLPDTNLLPA KRKTAAMRSE IVEIQTDGDQ  240
TTLDDCCTSH VQATKKFKQK ANFTEDTVVQ NAIAPTTHGP STTLSEGVVR YIEKEGCNSK  300
KEVQCGSSTP QNVDDDLEGN FPESNSIPAK RNRTAIAAEN SEGKTLKDQI PLGDGCDIRG  360
EVVKKFKQDG NSMMDDIDED TVASPVHGLM KFSSEGTVKH IEKEGCNLET EVQVGGVESN  420
GSPHGDDDQH CQLKRIAQSS HAFHQDHLVC DLQVPHDNAK VAELHAELDG QNNSVDETNG  480
HDQGFELQTE NATSLAMGVM EKNNSPENPV QNFEGNFQLS FGGSGSKDDM QHNPDFDMTS  540
DSDDYRDERM DIALKKDALL SSQCTYSQDS FATQAKYCVK CNKEGQLLVC SSDTCQLAVH  600
SSCLPSAAHF DGNGKFYCPF CAYSRAISEY MQVKRKASFA RKDLASFIGV QTVCQQKKAT  660
MKLGRESRNE LQKNEGNNSE DFVNKVSDSH CGVKMGNKHQ SEPPLSCSSD HSHSGEKVVS  720
PSDGMPNTLV SGNLERKYME PQCQLLGVQV EQPVVAHPVH GSDVDCKEAH MADRNEGNAG  780
AEGKKVSEIP ESALPQEPVC GPISESSEED NEKSVRSYSI RLRRPIKNYT FPAIPQLRRK  840
ILPWTKAEEE KLKEGVQRLS SPHDRSIPWK QILEFGGDVF QRGRTTIDLK DKWRNICKGG  900
PR