PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027085634.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 563aa    MW: 63211.1 Da    PI: 5.3958
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027085634.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS241.92.7e-7425154278374
            GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAee 171
                     ++a  + ++  P+ ++++++  q +l+ v+ ++++Hi+D++i  G+++  L+qaLa+R+ ++   l++T++g    +sk ++eetg++La+fA+ 
  XP_027085634.1 251 TSAKIVMQKSVPFGQVCQFAGTQGVLDHVADATKIHIVDLEIRTGMHYTILMQALATRSqNPLEYLKVTAIGT---KSKAKIEETGRQLASFAQV 342
                     3444559999*************************************************455569********...689**************** PP

            GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                     l+++f++n+++  ++ dl+ + ++++p+Ea+aV + +  + + +++  les    ++++vk ++P+v++v+e e +hns+ F++rf+eal +y a
  XP_027085634.1 343 LKLKFSINIIMLADIMDLNENLFEINPDEAVAVWVEYYFMFMISRQDMLES----LMNVVKAINPRVMIVTEVEGNHNSPVFVTRFIEALFFYGA 433
                     **********************************99998888855555555....**************************************** PP

            GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvl 360
                     +fdsle  l ++ ++r+ vE ++l+++i+n+va+eg+er+ r+  ++ W++ + ++G+ +v+ls + + qa+l+l++++ +   +++++ + l++
  XP_027085634.1 434 FFDSLEDCLKHDPKNRMIVESVYLSQAIRNIVATEGEERTIRQVAVNVWKAFFARFGMVQVELSMSSMYQANLVLKNFEcGSSCTLNKDGKGLII 528
                     *******************************************************************************9999************ PP

            GRAS 361 gWkdrpLvsvSaWr 374
                     gWk+ p+ s+SaW+
  XP_027085634.1 529 GWKGTPIHSLSAWK 542
                     *************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    
MEMFHSDHFE FLGVSGKYDS TEGFQFEDHG REENQNCLIT NDDEREASKG IGSFYPGTLG  60
SNQVHDSTAE KGVIYSKLHQ EQQLKDLTGF ACFNDPREEE ITKLADDVAF ANSEFNDANK  120
ERPYAGSLRI LKNYRRRFRK LSVEKMDLPS YQGCTLITGH KLSTDAILKL AAQNFIQSSS  180
KGTTESFELS HPYASSFGGL CVEDTKDVKL VQHLLASAEF VAKKQFERAV TPEGLGKMQS  240
IDILDMMSGL TSAKIVMQKS VPFGQVCQFA GTQGVLDHVA DATKIHIVDL EIRTGMHYTI  300
LMQALATRSQ NPLEYLKVTA IGTKSKAKIE ETGRQLASFA QVLKLKFSIN IIMLADIMDL  360
NENLFEINPD EAVAVWVEYY FMFMISRQDM LESLMNVVKA INPRVMIVTE VEGNHNSPVF  420
VTRFIEALFF YGAFFDSLED CLKHDPKNRM IVESVYLSQA IRNIVATEGE ERTIRQVAVN  480
VWKAFFARFG MVQVELSMSS MYQANLVLKN FECGSSCTLN KDGKGLIIGW KGTPIHSLSA  540
WKFGCDSKNE DLDFDLLNLS SSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.16e-51GRAS family protein