PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027085633.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 602aa MW: 67658 Da PI: 5.6326 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 284.8 | 2.4e-87 | 210 | 581 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPil 91 lv+ Ll+ Ae+v+++++e+a +lL r +l+s +g++++Rl+ yf AL++r+ r++ ++ + +s + +s ++a + ++ P+ XP_027085633.1 210 LVQHLLASAEFVAKKQFERAGKLLLRCDKLSSDHGNTIERLVYYFSGALHERIDRETGTVTPEGLGKMQSI-DildmMSGLTSAKIVMQKSVPFG 303 6899***************************************************4444443332222221.223444444555555******** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185 ++++++ q +l+ v+ ++++Hi+D++i G+++ L+qaLa+R+ ++ l++T++g +sk ++eetg++La+fA+ l+++f++n+++ + XP_027085633.1 304 QVCQFAGTQGVLDHVADATKIHIVDLEIRTGMHYTILMQALATRSqNPLEYLKVTAIGT---KSKAKIEETGRQLASFAQVLKLKFSINIIMLAD 395 *********************************************455569********...689****************************** PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 + dl+ + ++++p+Ea+aV + + + + +++ les ++++vk ++P+v++v+e e +hns+ F++rf+eal +y a+fdsle l ++ + XP_027085633.1 396 IMDLNENLFEINPDEAVAVWVEYYFMFMISRQDMLES----LMNVVKAINPRVMIVTEVEGNHNSPVFVTRFIEALFFYGAFFDSLEDCLKHDPK 486 ********************99998888855555555....****************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r+ vE ++l+++i+n+va+eg+er+ r+ ++ W++ + ++G+ +v+ls + + qa+l+l++++ + +++++ + l++gWk+ p+ s+SaW+ XP_027085633.1 487 NRMIVESVYLSQAIRNIVATEGEERTIRQVAVNVWKAFFARFGMVQVELSMSSMYQANLVLKNFEcGSSCTLNKDGKGLIIGWKGTPIHSLSAWK 581 *****************************************************************9999*************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 602 aa Download sequence |
MEMFHSDHFE FLGVSGKYDS TEGFQFEDHG REENQNCLIT NDDEREASKG IGSFYPGTLG 60 SNQVHDSTAE KGVIYSKLHQ EQQLKDLTGF ACFNDPREEE ITKLADDVAF ANSEFNDANK 120 ERPYAGSLRI LKNYRRRFRK LSVEKMDLPS YQGCTLITGH KLSTDAILKL AAQNFIQSSS 180 KGTTESFELS HPYASSFGGL CVEDTKDVKL VQHLLASAEF VAKKQFERAG KLLLRCDKLS 240 SDHGNTIERL VYYFSGALHE RIDRETGTVT PEGLGKMQSI DILDMMSGLT SAKIVMQKSV 300 PFGQVCQFAG TQGVLDHVAD ATKIHIVDLE IRTGMHYTIL MQALATRSQN PLEYLKVTAI 360 GTKSKAKIEE TGRQLASFAQ VLKLKFSINI IMLADIMDLN ENLFEINPDE AVAVWVEYYF 420 MFMISRQDML ESLMNVVKAI NPRVMIVTEV EGNHNSPVFV TRFIEALFFY GAFFDSLEDC 480 LKHDPKNRMI VESVYLSQAI RNIVATEGEE RTIRQVAVNV WKAFFARFGM VQVELSMSSM 540 YQANLVLKNF ECGSSCTLNK DGKGLIIGWK GTPIHSLSAW KFGCDSKNED LDFDLLNLSS 600 SS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 8e-57 | GRAS family protein |