PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027085367.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 311aa MW: 34867.5 Da PI: 9.8399

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027085367.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_027085367.1 83 FICEICNKGFQRDQNLQLHRRGH 105 89*******************88 PP
2	zf-C2H2	13.3	0.00025	160	182	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + XP_027085367.1 160 WKCEKCSKRYAVQSDWKAHSKIC 182 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MVVEDSMSNL TSGSNDASIS SGNRLEIGAV YPQQQQLPPL ASSPTNQSAQ PASKKKRNLP 60 GNPDPEAEVI ALSPRTLLAT NRFICEICNK GFQRDQNLQL HRRGHNLPWK LKQRSNKEVI 120 RKKVYICPET TCVHHDPSRA LGDLTGVKKH FSRKHGEKKW KCEKCSKRYA VQSDWKAHSK 180 ICGTREYRCD CGTLFSRRDS FITHRAFCDA LAEESARAIT TNNHPLGLLG GGGNSTTSSV 240 QLHLQNHPLH GGGLPVFPLK REQDQLQLQL QRQQSFNSNL RPPELPPWLS DPGEVHQQVM 300 TCSATRDWTK P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	123	KLKQRSNKEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-118	C2H2 family protein