PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027085366.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 317aa MW: 35457.2 Da PI: 9.9478

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027085366.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.7e-05	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_027085366.1 89 FICEICNKGFQRDQNLQLHRRGH 111 89*******************88 PP
2	zf-C2H2	13.3	0.00025	166	188	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + XP_027085366.1 166 WKCEKCSKRYAVQSDWKAHSKIC 188 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MMKAAGMVVE DSMSNLTSGS NDASISSGNR LEIGAVYPQQ QQLPPLASSP TNQSAQPASK 60 KKRNLPGNPD PEAEVIALSP RTLLATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR 120 SNKEVIRKKV YICPETTCVH HDPSRALGDL TGVKKHFSRK HGEKKWKCEK CSKRYAVQSD 180 WKAHSKICGT REYRCDCGTL FSRRDSFITH RAFCDALAEE SARAITTNNH PLGLLGGGGN 240 STTSSVQLHL QNHPLHGGGL PVFPLKREQD QLQLQLQRQQ SFNSNLRPPE LPPWLSDPGE 300 VHQQVMTCSA TRDWTKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	129	KLKQRSNKEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-118	C2H2 family protein