PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027085062.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 313aa MW: 35248.6 Da PI: 6.3621

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027085062.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.1	1.2e-19	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEde+l+++v+ +G tWk+ +++ g++R++k+c++rw++yl XP_027085062.1 15 RGPWTDEEDEKLINYVQNYGHVTWKSLPKKAGLNRCGKSCRLRWNNYL 62 89****************99***********************7 PP
2	Myb_DNA-binding	54.4	2.9e-17	68	111	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++ +Ed l+v+++ lG++ W++Ia++++ gRt++++k++w++ XP_027085062.1 68 RGMFSDQEDRLIVELHSILGNK-WSKIAAHLP-GRTDNEIKNHWNT 111 7889****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence
MVRSPCCETN NGLKRGPWTD EEDEKLINYV QNYGHVTWKS LPKKAGLNRC GKSCRLRWNN 60 YLRPDIKRGM FSDQEDRLIV ELHSILGNKW SKIAAHLPGR TDNEIKNHWN TKLRRKLLQL 120 GIDPQTHKPV VPDINQIVDF SRFLSAFNPA SNLMNVWTNV LLSQVDATQL AKFQLLQKLL 180 KTVNPGPAQN NLVSSTRFIN ADGAQVNTDF ILPTLQSSDF DPTFPDNNSG LSNAVTFSAQ 240 NDKTNSLSST TSTSTQTNNY LPSVVEATRA QVSSSVDQVN PPQDPLMTSS IIDTFDAWEE 300 LMDNEPFWED ILA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-72	MYB family protein