PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027084971.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 378aa    MW: 41312.1 Da    PI: 7.9505
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027084971.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08131152426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C++f++ G Ck Gd+C FaHg
  XP_027084971.1 131 SACPDFRK-GACKKGDSCEFAHG 152
                     67******.*************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MMIGDHSPRS NPTVQVPPWD FLDDHRTANI HSPYSISLNG SNASSFELAL DNLTALQRYL  60
PSNTGSDDVV SDTDDLDIPV DAFSCDQFRM FEFKVRRCAR ARSHDWTECP YAHPGEKARR  120
RDPRKYHYSG SACPDFRKGA CKKGDSCEFA HGVFECWLHP ARYRTQPCKD GTQCRRRVCF  180
FAHTPDQLRV LPQTECYDGS PSRLGCNSPG RHAYDSGVSP LSAKNGAFGS SPTSVLSSPP  240
SSPASESPPM SPSGAVSLNS VSGLAQSMRN LQIGNTRMTA GSPPWGIQVG GGFCSPRSPS  300
TLRPGFTSLP ATPTPARTRS GLGAFDLWDK ACQEEPAMER VESGRDLRAK IYAKLSKENS  360
LESATPVPDF GWISELVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-113C3H family protein