PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027084971.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 378aa MW: 41312.1 Da PI: 7.9505 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.1 | 1.5e-08 | 131 | 152 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G Ck Gd+C FaHg XP_027084971.1 131 SACPDFRK-GACKKGDSCEFAHG 152 67******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence |
MMIGDHSPRS NPTVQVPPWD FLDDHRTANI HSPYSISLNG SNASSFELAL DNLTALQRYL 60 PSNTGSDDVV SDTDDLDIPV DAFSCDQFRM FEFKVRRCAR ARSHDWTECP YAHPGEKARR 120 RDPRKYHYSG SACPDFRKGA CKKGDSCEFA HGVFECWLHP ARYRTQPCKD GTQCRRRVCF 180 FAHTPDQLRV LPQTECYDGS PSRLGCNSPG RHAYDSGVSP LSAKNGAFGS SPTSVLSSPP 240 SSPASESPPM SPSGAVSLNS VSGLAQSMRN LQIGNTRMTA GSPPWGIQVG GGFCSPRSPS 300 TLRPGFTSLP ATPTPARTRS GLGAFDLWDK ACQEEPAMER VESGRDLRAK IYAKLSKENS 360 LESATPVPDF GWISELVK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-113 | C3H family protein |