PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027084968.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 641aa MW: 73268.5 Da PI: 6.7286

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027084968.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.2	3.4e-10	4	46	50	91
FAR1 50 kerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 ++r +++++r+gC a+++vk +k +gk++vt++ +eHnHelap XP_027084968.1 4 RKRDPKPVSRIGCLAHFRVKYDKkSGKYVVTSFIKEHNHELAP 46 688999*************999**************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence
MWDRKRDPKP VSRIGCLAHF RVKYDKKSGK YVVTSFIKEH NHELAPPIVV PFLQPQKRAR 60 RVAVDVGFTK KDIEREWASS DIRDGDSRCV LTHSVLAYLS AKNDYDPGLF YKYDLDEENQ 120 LCSIFWADSK SRADYAFFGD VLVLNTKFRK NAYEKPFIIL AGLNNHDQTT VFGCALLGGK 180 TAETYVWLLE TFLEATNHKA PVSVITDGDK AIEEAIQKTF PTSQHRICRW HLFKDAVSSA 240 GDSSSFGPEF KKCMEENWNP EEFEVAWIKL VEKYGLQGHP WFEETYSRRT KWAEAYLREH 300 FFAGLTSIRG HGMNTYFTRF LQVWHKLHEF VRHYDKALVC LREDEAKADS ESESAYAAFC 360 TILRDLERHA ADVFTRSMFL KVREQIMGDA MLILSGKEYL KDDACWLYKF SEYMKPDAIW 420 KVRYDPSNQS LKCSCFKLVT DGVPCCHMVS VMKAEHLREF PRCCIHKRWT KCARSEIDSG 480 IDIQALNMAT QVARFRILNS TCSEMNYYAS QTIQGFNETR SLISKITSRV KHIYNSKGEV 540 DETAPEVSLD ADGSTTRSGM HDPKSTNSSG QCDATAVETP QPDDCSQRSH DQTTSQQLRL 600 NHGLQTSEGT GTTDDGEGRT QNGEFSGAPS QPINLIWEDN D

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence

MWDRKRDPKP VSRIGCLAHF RVKYDKKSGK YVVTSFIKEH NHELAPPIVV PFLQPQKRAR  60
RVAVDVGFTK KDIEREWASS DIRDGDSRCV LTHSVLAYLS AKNDYDPGLF YKYDLDEENQ  120
LCSIFWADSK SRADYAFFGD VLVLNTKFRK NAYEKPFIIL AGLNNHDQTT VFGCALLGGK  180
TAETYVWLLE TFLEATNHKA PVSVITDGDK AIEEAIQKTF PTSQHRICRW HLFKDAVSSA  240
GDSSSFGPEF KKCMEENWNP EEFEVAWIKL VEKYGLQGHP WFEETYSRRT KWAEAYLREH  300
FFAGLTSIRG HGMNTYFTRF LQVWHKLHEF VRHYDKALVC LREDEAKADS ESESAYAAFC  360
TILRDLERHA ADVFTRSMFL KVREQIMGDA MLILSGKEYL KDDACWLYKF SEYMKPDAIW  420
KVRYDPSNQS LKCSCFKLVT DGVPCCHMVS VMKAEHLREF PRCCIHKRWT KCARSEIDSG  480
IDIQALNMAT QVARFRILNS TCSEMNYYAS QTIQGFNETR SLISKITSRV KHIYNSKGEV  540
DETAPEVSLD ADGSTTRSGM HDPKSTNSSG QCDATAVETP QPDDCSQRSH DQTTSQQLRL  600
NHGLQTSEGT GTTDDGEGRT QNGEFSGAPS QPINLIWEDN D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-78	FAR1 family protein