PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027084710.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TALE

Protein Properties

Length: 301aa MW: 33952.3 Da PI: 6.7066

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027084710.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.5	9.2e-08	250	283	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + XP_027084710.1 250 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 283 469*****************************87 PP
2	ELK	22.6	2.5e-08	204	225	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ XP_027084710.1 204 ELKLELKQGFRSRIEDVREEIL 225 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MQEQGLGMMA GSGSGGLGGL GDVSVAIPAG DYQNRQLKAE IATHPLYEQL LSAHVACLRV 60 ATPIDHLPLI DAQLSQSHHI LRSYASQQQH LSHSLSPHER QDLDNFLGQY LLVLCSFKEQ 120 LQQHVRVHAV EAVMACREIE QNLQALTGIN IGEGSGATMS DDEDELQMDF SLDQSGADGH 180 DMMGFGPLLP TESERSLMER VRQELKLELK QGFRSRIEDV REEILRKRRA GKLPGDTTSV 240 LKNWWQQHSK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHSSSQ SVTSLKSKRK 300 R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	281	301	RKRNWHSSSQSVTSLKSKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62990.1	1e-161	TALE family protein