PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027084694.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | Trihelix | ||||||||
Protein Properties | Length: 443aa MW: 49301.4 Da PI: 9.9321 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 60.3 | 4.9e-19 | 27 | 118 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +Wt++e+laLi+a+re++ +lrrg l+ ++W++v++++ + +++ qC++k+e+l++ry+++k+++ + + + s++ +f++++a XP_027084694.1 27 CWTQEETLALIDAYRERWYALRRGYLRTADWDAVAAAVtnrcPDASPAKTSAQCRHKMEKLRQRYRAEKQRSLSYpSGRFFSSWFFFENMDA 118 8************************************987776677788999*******************999867788899*****9985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence |
MSVTTTTVAP AAADAAGKPA RKFPPPCWTQ EETLALIDAY RERWYALRRG YLRTADWDAV 60 AAAVTNRCPD ASPAKTSAQC RHKMEKLRQR YRAEKQRSLS YPSGRFFSSW FFFENMDAME 120 NGTSVSVAGS NREPENRENS ASGFPLKTFL DQNILKLKLS TKNRSTKVDG NSTPNFGFSQ 180 GVRAKNSSKN ADKKVGSDFS SKVFNGGYSS YMDIGSDKDE EEMDFHGGFR AKNVDDGMPG 240 LTGFKGKNFG KILGNSRSGF EFESLGGKGF EASDGFHMQT LGDESMVPPR LRLKRIGKVN 300 RSFDADQAKD GSWVSLGTRR KYAENLDSDL ESSGGLNGFY DQSRLGFEKR GFGGDSGGRG 360 EAKRGRSSID EMVSSIKMLG EGFMKMENMK MDIAREMEKN RMEMEMKRNE LILESQRQIV 420 DALAQSLMEI KRKKVKITAA PET |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 290 | 299 | RLRLKRIGKV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 5e-36 | Trihelix family protein |