PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027084469.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 379aa MW: 41713.7 Da PI: 7.2732 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 7 | 29 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C++sF++ L H+r+H XP_027084469.1 7 HKCKLCSRSFPSGRALGGHMRSH 29 79********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence |
MVRPERHKCK LCSRSFPSGR ALGGHMRSHL ANLPLPPKTP QKQEASSQLP PQPGGDASTE 60 STTSSDCSLS EEEVVVVQVK ECAAEDKGLV YGLRENPKKS FRMVDPQFLD GGSVVVQDRG 120 SETESTRKPT RQRSKRTRRM LVSAAKQEGA DEALIKEKKM MKTTESLLEL EQPVSSVSDT 180 SPEEDLALCL IMLSRDVWRR TSTTTTTTTT TTTSYDSAEE LKLVNSSTKR RHKKQKKIKI 240 NNNDSSSDQE GESSEELELP RNGVSRSCSI KNVTVDKKVH ECPFCGKVYG SGQALGGHKR 300 SHFLGSSTTL TTTATAATAA ESLLLESSSN AAKSQQGTLL MIDLNLPAPM EDEDIDDDHP 360 HESEDFNLHH RRGFCSFRC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 136 | RQRSKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 3e-31 | C2H2 family protein |