PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027084219.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TALE

Protein Properties

Length: 381aa MW: 42730.8 Da PI: 6.5928

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027084219.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.6	8.7e-08	330	363	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + XP_027084219.1 330 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 363 469*****************************87 PP
2	ELK	29	2.4e-10	284	305	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ XP_027084219.1 284 ELKHELKQGYKEKIVDIREEIL 305 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MAFPDHHLSP EMLNLRHFSD QQQHLPQSTP ETKPPPPPPT WLNSSHFTSA PPPHDSNFLN 60 LHSNSDSNSD SILTPAPLHA PHTNPNPTPS TTTTNTAPVP DLTHTTTTLN WQNAGYKAQI 120 LGHPLYQQLL SAHVACLRIA TPVDQLPRID AQLAQSQQVV TKYSALGGVG HANLGPEDHK 180 DLDQFMTHYV LLLCSFKEQL QQHVRIHAME AVMACWEIEQ SLQSLTGVSP GEGTGATMSD 240 DEDDQVDSDG NLFDGSLDGP DGMGFGPLIP TESERSLMER VRQELKHELK QGYKEKIVDI 300 REEILRKRRA GKLPGDTTSV LKDWWQSHSK WPYPTEEDKA RLVQETGLQL KQINNWFINQ 360 RKRNWHSNPS PSTALKSKRK R

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MAFPDHHLSP EMLNLRHFSD QQQHLPQSTP ETKPPPPPPT WLNSSHFTSA PPPHDSNFLN  60
LHSNSDSNSD SILTPAPLHA PHTNPNPTPS TTTTNTAPVP DLTHTTTTLN WQNAGYKAQI  120
LGHPLYQQLL SAHVACLRIA TPVDQLPRID AQLAQSQQVV TKYSALGGVG HANLGPEDHK  180
DLDQFMTHYV LLLCSFKEQL QQHVRIHAME AVMACWEIEQ SLQSLTGVSP GEGTGATMSD  240
DEDDQVDSDG NLFDGSLDGP DGMGFGPLIP TESERSLMER VRQELKHELK QGYKEKIVDI  300
REEILRKRRA GKLPGDTTSV LKDWWQSHSK WPYPTEEDKA RLVQETGLQL KQINNWFINQ  360
RKRNWHSNPS PSTALKSKRK R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	361	381	RKRNWHSNPSPSTALKSKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.2	1e-166	TALE family protein