PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027083921.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YC
Protein Properties Length: 122aa    MW: 13448.6 Da    PI: 9.7419
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027083921.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC105.24.3e-33221031999
           NF-YC  19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                     h++Plarikki+k + +dvkmis eaP++lskacelf+ e+t r+w  + + krrtl+k d+a+av  tdifdflv+ v ++
  XP_027083921.1  22 HSFPLARIKKIMKkSGDDVKMISGEAPIVLSKACELFVEEITRRAWRMTMQGKRRTLHKEDVASAVIATDIFDFLVNLVSEH 103
                     99**********825689**********************************************************999875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    
MRQAGTYSGI LSGGISGKTG PHSFPLARIK KIMKKSGDDV KMISGEAPIV LSKACELFVE  60
EITRRAWRMT MQGKRRTLHK EDVASAVIAT DIFDFLVNLV SEHSATSEQE EITTPPAMDL  120
KR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.36e-32NF-YC family protein