PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027083888.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 728aa MW: 81271.7 Da PI: 7.4531

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027083888.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00044	356	378	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C++sF++ L H+r+H XP_027083888.1 356 HKCKLCSRSFPSGRALGGHMRSH 378 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence
MMLKSARAKS KNYEDRHCAA SSEEEDLANC LVMLSNESFV QSDKEQENTD KHVEKGTFQC 60 KACKKVFNSH QALGGHRASH KKVKGCYAAR FNCSTNLNDQ DNDNNYEDAF YQHEEHLAPS 120 ENSSEPGLDL DFSPHHDHLP KNTTLSKRKS KAHQCSICQR VFSSGQALGG HKRCHWLTSN 180 LPDNTIIQNL RELQFDSQQL FKKPMLTKPE PLPLDLNFPP LLNNAVDNLH MNSADDPLNH 240 EAPARIFLQL WGNEEADNST SNNNHQQNYT TKSVVRGSLH DEDESAKEDG YRTEQTAKLS 300 NLKDMNLDGG SSRWLQGASL PTVISRLQEN LFNLWRCCAV KKAKKKKRKM VRPERHKCKL 360 CSRSFPSGRA LGGHMRSHLA NLPLPPKTPQ KQEASSQLPP QPGGDASTES TTSSDCSLSE 420 EEVVVVQVKE CAAEDKGLVY GLRENPKKSF RMVDPQFLDG GSVVVQDRGS ETESTRKPTR 480 QRSKRTRRML VSAAKQEGAD EALIKEKKMM KTTESLLELE QPVSSVSDTS PEEDLALCLI 540 MLSRDVWRRT STTTTTTTTT TTSYDSAEEL KLVNSSTKRR HKKQKKIKIN NNDSSSDQEG 600 ESSEELELPR NGVSRSCSIK NVTVDKKVHE CPFCGKVYGS GQALGGHKRS HFLGSSTTLT 660 TTATAATAAE SLLLESSSNA AKSQQGTLLM IDLNLPAPME DEDIDDDHPH ESEDFNLHHR 720 RGFCSFRC

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence

MMLKSARAKS KNYEDRHCAA SSEEEDLANC LVMLSNESFV QSDKEQENTD KHVEKGTFQC  60
KACKKVFNSH QALGGHRASH KKVKGCYAAR FNCSTNLNDQ DNDNNYEDAF YQHEEHLAPS  120
ENSSEPGLDL DFSPHHDHLP KNTTLSKRKS KAHQCSICQR VFSSGQALGG HKRCHWLTSN  180
LPDNTIIQNL RELQFDSQQL FKKPMLTKPE PLPLDLNFPP LLNNAVDNLH MNSADDPLNH  240
EAPARIFLQL WGNEEADNST SNNNHQQNYT TKSVVRGSLH DEDESAKEDG YRTEQTAKLS  300
NLKDMNLDGG SSRWLQGASL PTVISRLQEN LFNLWRCCAV KKAKKKKRKM VRPERHKCKL  360
CSRSFPSGRA LGGHMRSHLA NLPLPPKTPQ KQEASSQLPP QPGGDASTES TTSSDCSLSE  420
EEVVVVQVKE CAAEDKGLVY GLRENPKKSF RMVDPQFLDG GSVVVQDRGS ETESTRKPTR  480
QRSKRTRRML VSAAKQEGAD EALIKEKKMM KTTESLLELE QPVSSVSDTS PEEDLALCLI  540
MLSRDVWRRT STTTTTTTTT TTSYDSAEEL KLVNSSTKRR HKKQKKIKIN NNDSSSDQEG  600
ESSEELELPR NGVSRSCSIK NVTVDKKVHE CPFCGKVYGS GQALGGHKRS HFLGSSTTLT  660
TTATAATAAE SLLLESSSNA AKSQQGTLLM IDLNLPAPME DEDIDDDHPH ESEDFNLHHR  720
RGFCSFRC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	341	349	KKAKKKKRK
2	344	349	KKKKRK
3	480	485	RQRSKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	5e-30	C2H2 family protein