PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027083848.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 309aa    MW: 35506.2 Da    PI: 8.3383
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027083848.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.92e-2462152190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                     +fYn Y+k +GF ++k+  k s ++g++  r+f Cs+egkr+e+  + +++ r++r+etrtgC a+l++k +k ++k++vt++++eHnH++a
  XP_027083848.1  62 EFYNLYGKLTGFGIKKADVKIS-QDGTVRYRKFACSREGKRHERYYNlAQRIRQPRPETRTGCLACLRIKHDKaSEKYVVTNFVKEHNHKMA 152
                     6****************99998.7888*****************9997888999*******************9***************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MDREKGKNAV INLNEEDENC ESFSSSEEEF ISSEKIEKNY PVDDMDEEVM NMVFDSEEDA  60
YEFYNLYGKL TGFGIKKADV KISQDGTVRY RKFACSREGK RHERYYNLAQ RIRQPRPETR  120
TGCLACLRIK HDKASEKYVV TNFVKEHNHK MASKSSIPYL WSHRHVTDAD YAQVRTMKMA  180
GVKTSQVMKF FAMQCGGYGN VGFVLKDLYN RVDEERRVLI EAGDAKNAIA YFNGGRPVTN  240
HSSLNMMWTK NQALVSGESV EEYEWLLHTL TKAMGGRKPK AVITDGDKAM RRAINNVFPD  300
ARHRLCIGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-30FAR1 family protein