PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027083622.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 697aa MW: 80212.8 Da PI: 7.5604

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027083622.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.4	6.7e-20	26	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn+YA ++GFsvrk++ +k ++g +t+r++ C k+g + + + + + +rtra t+tg ak+++ + + + k++v++l+leHnHel XP_027083622.1 26 NFYNKYAFKMGFSVRKDYLNKD-KDGVTTSRRYSCRKKGVKCKYEGD-VMPKRTRAPTKTGYGAKMVIVLFRgTMKYRVHDLVLEHNHEL 113 6***************9998.8999**********999998.999***************999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence
MNCSKLAENR TPELGMEFNS EEDAYNFYNK YAFKMGFSVR KDYLNKDKDG VTTSRRYSCR 60 KKGVKCKYEG DVMPKRTRAP TKTGYGAKMV IVLFRGTMKY RVHDLVLEHN HELHIAQCAH 120 MMPSQRKVSE AQGFQAEISK DAGLSLKQSH ELMGKEAGGM GNVGYTREDL KDIFLDCEEQ 180 ITNIFWADAG MLIDYKFFRD VITFDTTYKT NKEYRPLGVF VGFNQHKQIV IFGAALMYDE 240 TIDSFKWVFG TFLEAMCGKR PSTILTDQDH AMAAALSVVM PETFHGLCTF HIRRNFMKHF 300 GNHYKENSDL PYMFGACMYE FEEVEQFNKV WEAMVKKHNL ENNEWLSGLY RIRDKWARCM 360 MKERWTAGMR STQLSESLNA AIKNHLKLDH DLVQFFRHFN RVVDEKRHNE LIAEYEMRQK 420 LPMVGLRQTP MLVHASETYS PTMFVAFQNE YGESTAMIML RQQDAAIIVE FAVMRYDGGP 480 ERIVVFNRND LSVRCSCKKY ENEGILCGHA LKVFDTVGIK IISPEYIKSR WTKRARAGDC 540 FDRRGQEVVA DPKVMISTRY REFAPAMIKV ATRAAMSEDT SKVAITVISD LSKRVELLLS 600 ESKEQPLQNK KNLNMEERDK IEIVSESEPT SVSFEEYMFM GCRSSIDSVS THSMSQTVNG 660 PPNAVAPDID KSQMGRNNTQ GLQLRVDVAS PENEVDE

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence

MNCSKLAENR TPELGMEFNS EEDAYNFYNK YAFKMGFSVR KDYLNKDKDG VTTSRRYSCR  60
KKGVKCKYEG DVMPKRTRAP TKTGYGAKMV IVLFRGTMKY RVHDLVLEHN HELHIAQCAH  120
MMPSQRKVSE AQGFQAEISK DAGLSLKQSH ELMGKEAGGM GNVGYTREDL KDIFLDCEEQ  180
ITNIFWADAG MLIDYKFFRD VITFDTTYKT NKEYRPLGVF VGFNQHKQIV IFGAALMYDE  240
TIDSFKWVFG TFLEAMCGKR PSTILTDQDH AMAAALSVVM PETFHGLCTF HIRRNFMKHF  300
GNHYKENSDL PYMFGACMYE FEEVEQFNKV WEAMVKKHNL ENNEWLSGLY RIRDKWARCM  360
MKERWTAGMR STQLSESLNA AIKNHLKLDH DLVQFFRHFN RVVDEKRHNE LIAEYEMRQK  420
LPMVGLRQTP MLVHASETYS PTMFVAFQNE YGESTAMIML RQQDAAIIVE FAVMRYDGGP  480
ERIVVFNRND LSVRCSCKKY ENEGILCGHA LKVFDTVGIK IISPEYIKSR WTKRARAGDC  540
FDRRGQEVVA DPKVMISTRY REFAPAMIKV ATRAAMSEDT SKVAITVISD LSKRVELLLS  600
ESKEQPLQNK KNLNMEERDK IEIVSESEPT SVSFEEYMFM GCRSSIDSVS THSMSQTVNG  660
PPNAVAPDID KSQMGRNNTQ GLQLRVDVAS PENEVDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-89	FAR1 family protein