PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027083604.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 329aa    MW: 37650.8 Da    PI: 9.2477
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027083604.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000454469631
                    HHHHHHHHHHHHHHHHHHHCTSCCC. CS
             HLH  6 nerErrRRdriNsafeeLrellPkas 31
                     e Er+RR++i + +  L e + ++s
  XP_027083604.1 44 EEKERKRRRNISTFLKLLAEKVTEDS 69
                    689*****************999854 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MGKSSSNDDE HRLDYSSIEL DPKWDKFHIL VAVAELERIR FAEEEKERKR RRNISTFLKL  60
LAEKVTEDSS IQNDSTGVTG LQLLAGKIDA NFTKGKRSFR RKTGSNHTLL SEELPSAISQ  120
FDFEGKHQED DGNHVLFSYG DIIKKPELKR LGSPSEENST DHQEIEMPRS KKAKGKPRYP  180
DGPSTSTICT IPEKFKNKIL EFGGSEESIV FVFQKVLTET DVNTHFSRLL VPLKQIKNGF  240
LTAEEQARFW DPNQKFGIDA IFVDPSLDEG RMNLRRWEMG KKDGKISYNF ALITNWTKVV  300
VKNGLRQGMT VHLWAFRRDL QLGFALVLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14852RKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.17e-10B3 family protein