PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027083367.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 560aa MW: 60795 Da PI: 4.721

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027083367.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.4	9.1e-12	375	417	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L XP_027083367.1 375 MAERRRRKKLNDRLYMLRSIVPKiS------KMDRASILGDAIEYLKEL 417 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MVSTSHSPLS PQAFSLCPPV SFPASSITAE MLPSSNATAT ATATATANTN SALWTQPEET 60 EAASSLSWSA HPRIAAATAA EEETCKAHQE INAVAAATAA STLSKPMLGT DWFINSAQDF 120 KATLSNDMAF PSNPSFETTA HYQNFYSQPS SSSSYFPPNS YLSSLFSLIS SDPVEQNGLL 180 ENNSTNFFLP SDNPYCSDSS SSVLLGNPEL NLPALGLEGL QGYVGNGILF PDKFNYVGLR 240 PLEVLPLGGV EQQQQLLQPQ PQRPTLFQKR AALRNNYLAA DAEKGLMLEG DDGVKSGKKN 300 ERSKRNDVEG ELEDVDDISC LNYDSDEVNL NSNVDRGPNE GNDGAGDKWN VGDINAVTNG 360 DEKGKKKGPP AKNLMAERRR RKKLNDRLYM LRSIVPKISK MDRASILGDA IEYLKELLQR 420 INDLHHELEA TPSGSLLEQT SSFHPLTPTL PTLPCCVKEE LNSSSLPSPK SNQPARVEVR 480 LREGRAVNIH MFCARRPGLL LSTISALDNL GLDIQQAVIS CFNGFALDVF RAEQCWEGQD 540 ILPEQVKAVL LDSAGYHGVM

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MVSTSHSPLS PQAFSLCPPV SFPASSITAE MLPSSNATAT ATATATANTN SALWTQPEET  60
EAASSLSWSA HPRIAAATAA EEETCKAHQE INAVAAATAA STLSKPMLGT DWFINSAQDF  120
KATLSNDMAF PSNPSFETTA HYQNFYSQPS SSSSYFPPNS YLSSLFSLIS SDPVEQNGLL  180
ENNSTNFFLP SDNPYCSDSS SSVLLGNPEL NLPALGLEGL QGYVGNGILF PDKFNYVGLR  240
PLEVLPLGGV EQQQQLLQPQ PQRPTLFQKR AALRNNYLAA DAEKGLMLEG DDGVKSGKKN  300
ERSKRNDVEG ELEDVDDISC LNYDSDEVNL NSNVDRGPNE GNDGAGDKWN VGDINAVTNG  360
DEKGKKKGPP AKNLMAERRR RKKLNDRLYM LRSIVPKISK MDRASILGDA IEYLKELLQR  420
INDLHHELEA TPSGSLLEQT SSFHPLTPTL PTLPCCVKEE LNSSSLPSPK SNQPARVEVR  480
LREGRAVNIH MFCARRPGLL LSTISALDNL GLDIQQAVIS CFNGFALDVF RAEQCWEGQD  540
ILPEQVKAVL LDSAGYHGVM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	365	383	KKKGPPAKNLMAERRRRKK
2	377	384	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	7e-97	bHLH family protein