PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027083311.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 684aa    MW: 76457.3 Da    PI: 6.0083
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027083311.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS433.31.8e-1323016671373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv+lL++cA+a++s++  ++++++arl elasp+g+p+ Rl+ayfteAL+ r+ar +++++++ pp++ + +  ++  ++l+l+++vsPi++f h
  XP_027083311.1 301 LVSLLVACADAIASKNILAINHFIARLGELASPRGSPISRLTAYFTEALSLRVARFWPHIFHISPPRDLD-RVDDDCGTSLRLLNQVSPIPRFIH 394
                     689***********************************************************99999997.5667778899************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el etg+rLa fAe+l++pfef++ v++rled++
  XP_027083311.1 395 FTSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHIRITGIGE----SKQELIETGDRLAGFAEALNLPFEFHP-VVDRLEDVR 484
                     ******************************************************....***************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     l++L+vk++E++aVn+++qlh++l +s+      +++L l++s++P+vv + eqea+hn++ F +r++++l+yysa+fdsle++++++s  r+k+
  XP_027083311.1 485 LWMLHVKEKESVAVNCIFQLHKMLYDSTGGVL--RDFLGLIRSTNPTVVLMGEQEAEHNGPGFETRLTNSLKYYSAIFDSLEENIAADSPIRMKI 577
                     ************************77766655..89*********************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373
                     E++ ++rei+n++aceg+er+erh+ + kW++++e+ GF++++ +e++  q ++ll++++s+ y+ve   e+ ++l+l W d+pL+++SaW
  XP_027083311.1 578 EEM-FAREIRNIIACEGQERFERHQGFVKWQKMMEQGGFRSLNTGERELLQSRMLLKMYGSENYKVEkqgEDGAALTLSWLDQPLYTISAW 667
                     ***.********************************************************999****6655577788************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    
MLAGCSSTLL SPRHRLRSEA PAQFQACHFP SMSTQRLDLP CSFTRKDTPR NQTIRPVGLS  60
VDKPIEAKTS SCSLKQNIRL PPSATTAQTG AYIEGSRKEN RNEFWEKNKS LKRYAEQGPF  120
AGDDDESCMI RAKRKRGNGK SQDFPEEEKK LTLGQLGSGS FWLQQPPFDV PRSVPLIAGL  180
SSPQIPLSLS YSGDEDRVCF VPSDVISPPL PLSNNPWVES VVTQITDLGD KNVETGQGPA  240
KEASASSTSS ESQGLVLRLN ENPTEHEIGN GSKRPNTSEI AEVVAGQNDD DNHREHDGFE  300
LVSLLVACAD AIASKNILAI NHFIARLGEL ASPRGSPISR LTAYFTEALS LRVARFWPHI  360
FHISPPRDLD RVDDDCGTSL RLLNQVSPIP RFIHFTSNEI LLRAFEGKDR VHIIDFDIKQ  420
GLQWPSLFQS LASRTNPPSH IRITGIGESK QELIETGDRL AGFAEALNLP FEFHPVVDRL  480
EDVRLWMLHV KEKESVAVNC IFQLHKMLYD STGGVLRDFL GLIRSTNPTV VLMGEQEAEH  540
NGPGFETRLT NSLKYYSAIF DSLEENIAAD SPIRMKIEEM FAREIRNIIA CEGQERFERH  600
QGFVKWQKMM EQGGFRSLNT GERELLQSRM LLKMYGSENY KVEKQGEDGA ALTLSWLDQP  660
LYTISAWWSI DVAGSSSSFS QRVD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein