PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027083232.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 360aa MW: 39683.7 Da PI: 5.9496

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027083232.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	8e-12	193	236	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L XP_027083232.1 193 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 236 589*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MEHTDQTQNG LLEEFLVAPK LDSYWTTFPG GGIEIFPNGW NCESFDRNDH NQDLLTSNTN 60 SNSLLGLLSS PAALLAAGSH ESGFAFPFGE STSYPFLDHV GDGFSTAVPE LGSSYDRSNF 120 DSLPPVPIQQ DYGEGMVEHG GNLGLRGLQE GKGFCKVEVE QPTATSIGAS RVGLCGDKRS 180 KIKKAEGQPS KNLMAERRRR KRLNDRLSML RSIVPKISKM DRTSILGDTI DYMKELLDKI 240 HKSREESTEE NINQLTKIGN LKQLKPNEVV ARNPPKFDVE RRSVDTRIEI CCTAKPGMLL 300 STVSTMEALG LDIQQCVISC FNDFSVQASC SEVAEHRRIV GSEDVKQALF RNAGYGGRCL

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MEHTDQTQNG LLEEFLVAPK LDSYWTTFPG GGIEIFPNGW NCESFDRNDH NQDLLTSNTN  60
SNSLLGLLSS PAALLAAGSH ESGFAFPFGE STSYPFLDHV GDGFSTAVPE LGSSYDRSNF  120
DSLPPVPIQQ DYGEGMVEHG GNLGLRGLQE GKGFCKVEVE QPTATSIGAS RVGLCGDKRS  180
KIKKAEGQPS KNLMAERRRR KRLNDRLSML RSIVPKISKM DRTSILGDTI DYMKELLDKI  240
HKSREESTEE NINQLTKIGN LKQLKPNEVV ARNPPKFDVE RRSVDTRIEI CCTAKPGMLL  300
STVSTMEALG LDIQQCVISC FNDFSVQASC SEVAEHRRIV GSEDVKQALF RNAGYGGRCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	184	KRSKIKK
2	196	203	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	7e-84	bHLH family protein