PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027083146.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HB-other

Protein Properties

Length: 354aa MW: 40086.1 Da PI: 4.8426

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027083146.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	34.9	2.7e-11	296	344	5	53
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +++k ql++Le+++++++ ps +++ + + ++L++++V WF +Ra XP_027083146.1 296 KRIKKAQLDTLERVYNRTKRPSNAMISNIVHLTNLPKKRVVKWFEDKRA 344 5699********************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MGASTAAWLP HMSSFVALKP HCCLNKKPLF VDTKSIRTSC ILPRQSFSSS SILTFARRRG 60 GHQASSSPVK SKKQKKKEQT FGSKSTQEDE DDDAFEALFR QLEEDLKNDN LSSENGDDDD 120 EISEEDLAKL ERELEEALKD DELFGALDLV GDGKTEDESD EDEKEEDNED DNTANYHVED 180 LEDDDNDEEM PVKLKNWQLK RLAYALKNGR RKTNIKSLAA DLCLDRAVVL ELLRDPPPDL 240 LMMSAALPDK PVSTVVEPVN KLKEACPLEM TPVTTKAEAE VKVPVHVMQS NWSAKKRIKK 300 AQLDTLERVY NRTKRPSNAM ISNIVHLTNL PKKRVVKWFE DKRAEDGIPE HRLP

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MGASTAAWLP HMSSFVALKP HCCLNKKPLF VDTKSIRTSC ILPRQSFSSS SILTFARRRG  60
GHQASSSPVK SKKQKKKEQT FGSKSTQEDE DDDAFEALFR QLEEDLKNDN LSSENGDDDD  120
EISEEDLAKL ERELEEALKD DELFGALDLV GDGKTEDESD EDEKEEDNED DNTANYHVED  180
LEDDDNDEEM PVKLKNWQLK RLAYALKNGR RKTNIKSLAA DLCLDRAVVL ELLRDPPPDL  240
LMMSAALPDK PVSTVVEPVN KLKEACPLEM TPVTTKAEAE VKVPVHVMQS NWSAKKRIKK  300
AQLDTLERVY NRTKRPSNAM ISNIVHLTNL PKKRVVKWFE DKRAEDGIPE HRLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	1e-54	HB-other family protein