PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027083093.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

E2F/DP

Protein Properties

Length: 456aa MW: 50494.3 Da PI: 4.5413

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027083093.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	86.6	1.9e-27	135	200	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg XP_027083093.1 135 RYDSSLGLLTKKFINLIKHAEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 200 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MQQQQQQQQQ QALKKQLPFT SMKPPFGDYH HFSTDPHRLP LEPEAVIVKS SPPAPPPLKR 60 KNDVVDVEVE SNDQNHGLGY TDAANVSAKT PVSGKVGKAQ KAPRMTKASR SGSQTPATNV 120 GSPSGNHLTP VGPCRYDSSL GLLTKKFINL IKHAEDGILD LNKAADTLEV QKRRIYDITN 180 VLEGIGLIEK KLKNRIQWKG LDVSRPGEVD ESVASLQADI ENLTMEEHRL DDQIREMQER 240 LRDLSEAENN QKWLFVTEED IKSLPCFQNE TLIAIKAPHG TTLEVPDPDE AVDYPQRRYR 300 IVLRSTMGPI DVYLVSQFEE KFEEINAVEA PPDIPSTSGV NENLATTSVT KESGGDNIQI 360 EEQEDNRMCS DIGTSQDFVS GIMKIVPDVD SDADYWLLSD ADVSITDMWR TESGVDWGDL 420 SAIQENYAMP SVSTPRAQTP PPHTTEVPSA TNVSGS

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MQQQQQQQQQ QALKKQLPFT SMKPPFGDYH HFSTDPHRLP LEPEAVIVKS SPPAPPPLKR  60
KNDVVDVEVE SNDQNHGLGY TDAANVSAKT PVSGKVGKAQ KAPRMTKASR SGSQTPATNV  120
GSPSGNHLTP VGPCRYDSSL GLLTKKFINL IKHAEDGILD LNKAADTLEV QKRRIYDITN  180
VLEGIGLIEK KLKNRIQWKG LDVSRPGEVD ESVASLQADI ENLTMEEHRL DDQIREMQER  240
LRDLSEAENN QKWLFVTEED IKSLPCFQNE TLIAIKAPHG TTLEVPDPDE AVDYPQRRYR  300
IVLRSTMGPI DVYLVSQFEE KFEEINAVEA PPDIPSTSGV NENLATTSVT KESGGDNIQI  360
EEQEDNRMCS DIGTSQDFVS GIMKIVPDVD SDADYWLLSD ADVSITDMWR TESGVDWGDL  420
SAIQENYAMP SVSTPRAQTP PPHTTEVPSA TNVSGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22220.2	1e-158	E2F/DP family protein