PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027083064.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 328aa    MW: 36099.9 Da    PI: 8.8946
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027083064.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA927.5e-29171225358
       CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     p+ VNaKQy++Il+RR  Rakle+++k+  k rkpylheSRhkhA+rRpRgsgGrF
  XP_027083064.1 171 PVLVNAKQYRAILRRRRIRAKLEAQNKM-LKFRKPYLHESRHKHAVRRPRGSGGRF 225
                     99**************************.9*************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MQSSCNKDGQ SLAPFLITCS SLWNSTEQSK FSPSKSVITG PESSNNEFFH VKQSDLLFQE  60
LDSLSTLSTC QSQYVMADAA RNSPSGDETH GRRAEQYQRS PLLCVSADFT VSQVQLDYNK  120
SLACIPFPSS ESYFGGLVAA YGPNALVCPP MVGMLHARVP LPPLQCAEGM PVLVNAKQYR  180
AILRRRRIRA KLEAQNKMLK FRKPYLHESR HKHAVRRPRG SGGRFLNMKD IKPSKLSSPS  240
YTEDTPLKML AGDISGSEAR LSESCSWAAS TPSGSDVTSI FNGDDIFQHP ENQVSASSFH  300
MGMRVGKDST HLEAGNLLFL SIDGRARN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210219RHKHAVRRPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.14e-39NF-YA family protein