PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027083047.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 557aa MW: 59122.3 Da PI: 7.6808

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027083047.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.7	4.2e-38	98	255	2	136
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasec 73 g+kdrhsk+ T +g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a +i el++ XP_027083047.1 98 SGGKDRHSKVWTTKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLLKAAASSIAELPSIntafpdtpqqlsdekrssagtheL------- 185 689*********************************************************99665554444443333222222220....... PP TCP 74 eaesssssasnsssg....................kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136 g a +++a+s+ s++s+ s l+l++ esr kar+rarer +ek + k+k+ XP_027083047.1 186 --------------GfdsaemdmegelnyqqqqqlGAFSKSACSSTSETSKGSGLSLSRsESRIKARERARERAAEKEKEKEKE 255 ..............2334444444455555555556777777999999999999*********************9999776 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MEMEEMQTPG CKFPRIRSRS GRINDDAAKI GHKGDDQCKP EEDEADGEEE VKRANVNGSA 60 RGGGGGVGVG GLDITASSGL GRLCGWPSSR IVRVSRASGG KDRHSKVWTT KGLRDRRVRL 120 SVTTAIQFYD LQDRLGYDQP SKAVEWLLKA AASSIAELPS INTAFPDTPQ QLSDEKRSSA 180 GTHELGFDSA EMDMEGELNY QQQQQLGAFS KSACSSTSET SKGSGLSLSR SESRIKARER 240 ARERAAEKEK EKEKEESSRV AHQPHLNVNP ISENSSFTQL LTAGMSNSAN VSNTSSNNNT 300 TGSPTGGSIH QNPGSGSGSG GGGSNAGGNG NNGTANESNF FHKSSSRHWS SSTPMDYFAT 360 GLLGLSSSSR AIHQPSASFL GQIQLGNPLH QSLTSVSSPL FTITADHHHH HSSHTNLPHF 420 SFVPDHLVPV VTAAGGNGNS QSNHTGNGNG SNSDYNLNFT ISSPSSSGLA GFNRGTLQSN 480 SSSPPSLLPH VQRFSPIDGP SSAFFSSTTA SPPNAAVAPV ENHHHHHHHF LPGFDARLQL 540 CYGDGTRHSD HKSKGKN

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MEMEEMQTPG CKFPRIRSRS GRINDDAAKI GHKGDDQCKP EEDEADGEEE VKRANVNGSA  60
RGGGGGVGVG GLDITASSGL GRLCGWPSSR IVRVSRASGG KDRHSKVWTT KGLRDRRVRL  120
SVTTAIQFYD LQDRLGYDQP SKAVEWLLKA AASSIAELPS INTAFPDTPQ QLSDEKRSSA  180
GTHELGFDSA EMDMEGELNY QQQQQLGAFS KSACSSTSET SKGSGLSLSR SESRIKARER  240
ARERAAEKEK EKEKEESSRV AHQPHLNVNP ISENSSFTQL LTAGMSNSAN VSNTSSNNNT  300
TGSPTGGSIH QNPGSGSGSG GGGSNAGGNG NNGTANESNF FHKSSSRHWS SSTPMDYFAT  360
GLLGLSSSSR AIHQPSASFL GQIQLGNPLH QSLTSVSSPL FTITADHHHH HSSHTNLPHF  420
SFVPDHLVPV VTAAGGNGNS QSNHTGNGNG SNSDYNLNFT ISSPSSSGLA GFNRGTLQSN  480
SSSPPSLLPH VQRFSPIDGP SSAFFSSTTA SPPNAAVAPV ENHHHHHHHF LPGFDARLQL  540
CYGDGTRHSD HKSKGKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	7e-39	TCP family protein