PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027082952.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 327aa MW: 36563.2 Da PI: 6.8761

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027082952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.2	3.9e-18	11	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd++l+++++++G g+W t ++ g++R++k+c++rw +yl XP_027082952.1 11 KGPWSIEEDKKLIEYIEKHGQGNWQTLPKQAGLNRCGKSCRLRWTNYL 58 79********************************************97 PP
2	Myb_DNA-binding	48	2.9e-15	64	109	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++e++ + ++kqlG++ W++Ia++++ +Rt++++k++w+++l XP_027082952.1 64 RGGFSAEDEATITALHKQLGNK-WSRIAAHLP-RRTDNEIKNFWNTHL 109 7889****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MARSPENGVK KGPWSIEEDK KLIEYIEKHG QGNWQTLPKQ AGLNRCGKSC RLRWTNYLRP 60 GIKRGGFSAE DEATITALHK QLGNKWSRIA AHLPRRTDNE IKNFWNTHLK KKLLRKGIDP 120 TTHKPIPDFN LLNLSQTQLS SVSNLYNVIS PLDTALNFQA SANDLIKFQL LQNMMQAINP 180 NPLPYVQGNT NLADLIQLNR IFNGANTDFT VDPLQAQSMT ANFCNISPLL NQQQTSTSHS 240 LQCSDGEMIP GPIRDDNVKV PSNVYNSEYS LPSLFSATPE SSVVNPLENF MHTSILAEAP 300 EQSNVFDALE SLVDDEASSS FWKDILG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	3e-72	MYB family protein