PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027082694.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 555aa MW: 60976.6 Da PI: 6.9756

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027082694.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.7e-12	358	403	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YI++L XP_027082694.1 358 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLADAVAYINEL 403 799*********************6.....4*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MEDILAAAAS SPASLLCEAT LAAPKQRLQF IMQNQREWWV YSIFWQASRD RDGRLVLSWG 60 DGHFRGPKDC SQRACNNNGL LLQQPLADNG VKVTTQDIFG RRKAGKEVPS SFPWRDSTSH 120 SKSDGFGDGR DVADSEWFYM LSLTRCFVSG EDLLVRTFNS GSYAWLVGDH QLLFYNCERA 180 KEAHSHGVKT FVCISTSGGI LELGSSELIK EDWGLVQLCK TLFGSEDQNS TSSTSTTTTT 240 RDAILGSNNT TPAGGGLFDI GGLLGHDPKQ NSLQEDKPQE SNLTIMNIDD ESASGTLTPI 300 GGQRISTGSA GMAHTGPKLL ETQNFMPEAA GKWSKVRSPS SRRRMREASM TGQEMALNHV 360 EAERQRREKL NHRFYALRSV VPNVSRMDKA SLLADAVAYI NELKAKIQEL EARVGVGSLG 420 GAQYHDRKLL VTTATSCGDF IQETQSTVTA DQNQSGMSSK PYSSVPYTAN NSSHEIQVKF 480 VNGSVAILHI LCPDVNYPSA KLMDALRQME LQVCSASFSP VQDLMLHDVV IRIPRNDALA 540 TEDALKTALL RRLRL

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MEDILAAAAS SPASLLCEAT LAAPKQRLQF IMQNQREWWV YSIFWQASRD RDGRLVLSWG  60
DGHFRGPKDC SQRACNNNGL LLQQPLADNG VKVTTQDIFG RRKAGKEVPS SFPWRDSTSH  120
SKSDGFGDGR DVADSEWFYM LSLTRCFVSG EDLLVRTFNS GSYAWLVGDH QLLFYNCERA  180
KEAHSHGVKT FVCISTSGGI LELGSSELIK EDWGLVQLCK TLFGSEDQNS TSSTSTTTTT  240
RDAILGSNNT TPAGGGLFDI GGLLGHDPKQ NSLQEDKPQE SNLTIMNIDD ESASGTLTPI  300
GGQRISTGSA GMAHTGPKLL ETQNFMPEAA GKWSKVRSPS SRRRMREASM TGQEMALNHV  360
EAERQRREKL NHRFYALRSV VPNVSRMDKA SLLADAVAYI NELKAKIQEL EARVGVGSLG  420
GAQYHDRKLL VTTATSCGDF IQETQSTVTA DQNQSGMSSK PYSSVPYTAN NSSHEIQVKF  480
VNGSVAILHI LCPDVNYPSA KLMDALRQME LQVCSASFSP VQDLMLHDVV IRIPRNDALA  540
TEDALKTALL RRLRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17880.1	7e-34	bHLH family protein