PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027082673.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | NF-YC | ||||||||
Protein Properties | Length: 122aa MW: 13443.6 Da PI: 8.5055 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 107.1 | 1.1e-33 | 22 | 102 | 19 | 98 |
NF-YC 19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 h++Plarikki+k + +dvkmis eaP++lskacelf+ e+t r+w+ + + krrtl+k d+a+av tdifdflv+ v + XP_027082673.1 22 HSFPLARIKKIMKkSGDDVKMISGEAPIVLSKACELFVEEITRRAWMMTMQGKRRTLHKEDVASAVIATDIFDFLVNLVSE 102 99**********825689**********************************************************99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence |
MRQAGTYSGI LSGGISGKTG PHSFPLARIK KIMKKSGDDV KMISGEAPIV LSKACELFVE 60 EITRRAWMMT MQGKRRTLHK EDVASAVIAT DIFDFLVNLV SERSATSEQE EITTPPAMDL 120 ER |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 1e-31 | NF-YC family protein |