PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027082253.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 698aa MW: 81226.1 Da PI: 8.8952

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027082253.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.3	2.9e-14	13	80	22	89
FAR1 22 skrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 ++++g ++ r++ C+keg +++ + + + +rtr+ t+tgC ak+ + + + + k++v++l+leHnHel XP_027082253.1 13 KDKDGVTMFRRYSCYKEGVKRKYEGD-VMPKRTRSPTKTGCGAKMIIVLLRgTMKYRVHDLVLEHNHEL 80 45789999************9999.9999**********9999888**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence
MPLKWDLVYY LNKDKDGVTM FRRYSCYKEG VKRKYEGDVM PKRTRSPTKT GCGAKMIIVL 60 LRGTMKYRVH DLVLEHNHEL HITQCSHMIP SQRKSHELMG KEAGGLGNVG YTREDLKRYL 120 RTRRERSLKY GEAVTFDTTY KTNKEYRPFG VFVGFNQHRQ FVIFGAALMY DETIDSFKWV 180 FGTFLEVMYE KRPSTILTDQ DHAMAAVLSV VMPETFHDLC TFHIRCNFMK HLDNHYKENS 240 DLPYMFGACM YDIEEVKQFN KLWEAMVKKH NLENNEWLSG LYRIRDKWAR CMMKERWTAG 300 MRSTQLSESL NAAIKNYLKL DHDLVQFFRH FNLVVDDKRH NELIAEYEMR QKLPMVGLRQ 360 TLMLVHAAET YSPTVFVAFQ NEYGESTSMV ILRQQDPRMF VEFAVMRYDG GPERIVVFNR 420 TDLSVRSSCK KYENEEILCG HALKVFDTVG IKTIPPEYVK RRWTKRPRAG DCFDRRGREI 480 VVDPKVIIST RYRELAPTMI KVATRAAMSE DTSKVVITVI SNLAKRVELL LSESEEQPSQ 540 NHKNLNVEER DKIEIVNEMG EAIVARGIKK RGCEKRSRVM RSWVDKFDRV KRKSKLSRTT 600 ETTVSESKPT SIEFDEHIFM GCRSSTDSAH SRSQSVNGPP NAVAPEIEES EMEERAAIST 660 HCDIDGYNVF SPSPQERNNT QGLRLTVDVA TPQMQVDE

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence

MPLKWDLVYY LNKDKDGVTM FRRYSCYKEG VKRKYEGDVM PKRTRSPTKT GCGAKMIIVL  60
LRGTMKYRVH DLVLEHNHEL HITQCSHMIP SQRKSHELMG KEAGGLGNVG YTREDLKRYL  120
RTRRERSLKY GEAVTFDTTY KTNKEYRPFG VFVGFNQHRQ FVIFGAALMY DETIDSFKWV  180
FGTFLEVMYE KRPSTILTDQ DHAMAAVLSV VMPETFHDLC TFHIRCNFMK HLDNHYKENS  240
DLPYMFGACM YDIEEVKQFN KLWEAMVKKH NLENNEWLSG LYRIRDKWAR CMMKERWTAG  300
MRSTQLSESL NAAIKNYLKL DHDLVQFFRH FNLVVDDKRH NELIAEYEMR QKLPMVGLRQ  360
TLMLVHAAET YSPTVFVAFQ NEYGESTSMV ILRQQDPRMF VEFAVMRYDG GPERIVVFNR  420
TDLSVRSSCK KYENEEILCG HALKVFDTVG IKTIPPEYVK RRWTKRPRAG DCFDRRGREI  480
VVDPKVIIST RYRELAPTMI KVATRAAMSE DTSKVVITVI SNLAKRVELL LSESEEQPSQ  540
NHKNLNVEER DKIEIVNEMG EAIVARGIKK RGCEKRSRVM RSWVDKFDRV KRKSKLSRTT  600
ETTVSESKPT SIEFDEHIFM GCRSSTDSAH SRSQSVNGPP NAVAPEIEES EMEERAAIST  660
HCDIDGYNVF SPSPQERNNT QGLRLTVDVA TPQMQVDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-66	FAR1 family protein