PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027082172.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HSF
Protein Properties Length: 333aa    MW: 37153.7 Da    PI: 5.354
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027082172.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind31.64.4e-104480238
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHH CS
    HSF_DNA-bind  2 Flkklyeiledeelkeliswsengnsfvvldeeefak 38
                    Fl k+y+i++++e++++isws++g+sfvv+d+++fa 
  XP_027082172.1 44 FLLKVYDIVKNPETDSIISWSSSGTSFVVWDPHRFAA 80
                    9**********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MGADVSESSS NAIVTAAAAI SATPLAKEGY ANGASSRVRA PPPFLLKVYD IVKNPETDSI  60
ISWSSSGTSF VVWDPHRFAA EGFIKINWDR LEFQNAWFQK GKKSWLKKIK RRIQGTQIAH  120
LRKPLETERQ LSLSGEQKKF ESLMQEHDAL KVETMKLKDM EANLVKETEI LEKQAQCITS  180
KRQNMLKYMI HEVLIRKKEL QSNDAANDQG SGGRQSIESS VELLEEGGTS HGSRKNSPRA  240
QSGTGKTFSN VDLSTAVQEE EDCTVSMGKF SDFYTAVYSS LEKQLMDDIS CENVPEEERE  300
NLQQNDVIPL EDLIEGPADW NEFAKGIGNK AKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106112LKKIKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-15HSF family protein