PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027082152.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 626aa    MW: 70727.8 Da    PI: 6.113
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027082152.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS248.33.1e-762105511345
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kal.ppsetsekn...sseelaalkl.fsevsP 89 
                     lv+ Ll+ Ae v+++++e+a +lL r  +l+s +g++++Rl+ yf  AL++r+ r++ ++  + l ++++    +   + + l++ k+  ++  P
  XP_027082152.1 210 LVQHLLASAELVAKKQFERAGKLLLRCDKLSSDQGNTIERLVYYFSGALHERIDRETGTVTpEGLgKMQSI---DildMMSGLTSAKIsMQKSVP 301
                     6899***************************************************4444440333222222...123444444444446****** PP

            GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                     + ++++++  q +l+ v+ ++++Hi+D++i  G+++  L+qaLa+R+ ++   l++T++g    +sk ++eetg++La+fA++l+++f++n++++
  XP_027082152.1 302 FGQVCQFAGTQGVLDHVADATKIHIVDLEIRTGMHYTILMQALATRSqNPLEYLKVTAIGT---KSKAKIEETGRQLASFAQALKLKFSINIIMV 393
                     ***********************************************455569********...689**************************** PP

            GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                     +++ dl+ + ++++ +Ea+aV + +  + + +++  les    ++++vk ++P+v++v+e e +hns+ F++rf+eal +y a+fdsle  l ++
  XP_027082152.1 394 TDIMDLNENLFEINADEAVAVWVEYYFMFMIRRQDMLES----LMNVVKAINPRVMIVTEVEGNHNSPVFVTRFIEALFFYGAFFDSLEDCLKHD 484
                     ***********************9999999977777777....**************************************************** PP

            GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                      ++r+ vE ++l+++i+n+va+eg+er+ r+  ++ W++ + ++G+ +v ls k +++++ +  +++
  XP_027082152.1 485 PKNRMIVESVYLSQAIRNIVATEGEERTIRQVAVNVWKAFFARFGMVQVFLSIKLVSEVQVMRLNYS 551
                     ****************************************************999999987765555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    
MEMFHSDHFE FLGVSGKYDS TEGFQFEDHG REEKRNCLIT NNDEREASKG IGSFYPGTLG  60
SNQVHDSTAE KGVIYSKLHQ EQQLKDLTGF ACFNDPHEEE ITKLADDVAF ANSEFNDANK  120
ERPYAGSLQI LKNYRRRFRK LSVEKMDLPS YQGCTLITGH KLSTDAILKL AAQNFIESSS  180
KGTTESFELS HPYASSFGGL CVEDTKDVKL VQHLLASAEL VAKKQFERAG KLLLRCDKLS  240
SDQGNTIERL VYYFSGALHE RIDRETGTVT PEGLGKMQSI DILDMMSGLT SAKISMQKSV  300
PFGQVCQFAG TQGVLDHVAD ATKIHIVDLE IRTGMHYTIL MQALATRSQN PLEYLKVTAI  360
GTKSKAKIEE TGRQLASFAQ ALKLKFSINI IMVTDIMDLN ENLFEINADE AVAVWVEYYF  420
MFMIRRQDML ESLMNVVKAI NPRVMIVTEV EGNHNSPVFV TRFIEALFFY GAFFDSLEDC  480
LKHDPKNRMI VESVYLSQAI RNIVATEGEE RTIRQVAVNV WKAFFARFGM VQVFLSIKLV  540
SEVQVMRLNY SWASEFFSEL DRCAMGLAGG PVDVRPRSQG LAEVQNAVWM LKKNGSMFER  600
RGDLDDKDFL GVFLPIREHA KKNRDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.17e-46GRAS family protein