PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027082097.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NF-YC

Protein Properties

Length: 262aa MW: 28769.8 Da PI: 4.5143

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027082097.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	38.4	2.7e-12	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +P l+sk+ elf+ +l r++ + + +t++ ++++v++ ++fdfl div r XP_027082097.1 1 MQADEDVGKIAMAVPLLVSKSLELFLQDLCDRTYEITLKRGAKTVNSLHLKQCVQSFNVFDFLRDIVSR 69 899***************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
MQADEDVGKI AMAVPLLVSK SLELFLQDLC DRTYEITLKR GAKTVNSLHL KQCVQSFNVF 60 DFLRDIVSRV PDLGGSEAAA EGSSARKRKA IEDEGNDSDN EAKKSHVSET GHTSGRGRGR 120 GRGRGRGRAN RTLEKESISQ CEKYEDDLDI SLQNGDKKSI NIKRMDNGAN PDDTKISLVA 180 QNAEAPVRNF DLNVDLNENA DSGAIPAGTP STSSAKPPME VRPEEYPGWS LADMESMAID 240 PVQLAKLNQR IEEEEEDYDE EG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	125	RGRGRGRGRG
2	116	126	RGRGRGRGRGR
3	118	127	RGRGRGRGRG
4	118	128	RGRGRGRGRGR
5	120	129	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-48	NF-YC family protein