PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027082074.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YC
Protein Properties Length: 279aa    MW: 30824.3 Da    PI: 4.8839
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027082074.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC59.28.6e-196861898
           NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                    ++++P arikki++adedv +i+  +P l+sk+ elf+ +l  r++  + +   +t++   ++++v++ ++fdfl div r
  XP_027082074.1  6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKSLELFLQDLCDRTYEITLKRGAKTVNSLHLKQCVQSFNVFDFLRDIVSR 86
                    5789**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKSLE LFLQDLCDRT YEITLKRGAK  60
TVNSLHLKQC VQSFNVFDFL RDIVSRVPDL GGSEAAAEGS SARKRKAIED EGNDSDNEAK  120
KSHVSETGHT SGRGRGRGRG RGRGRANRTL EKESISQCEK YEDDLDISLQ NGDKKSINIK  180
RMDNGANPDD TKISLVAQNA EAPVRNFDLN VDLNENADSG AIPAGTPSTS SAKPPMEVRP  240
EEYPGWSLAD MESMAIDPVQ LAKLNQRIEE EEEDYDEEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133142RGRGRGRGRG
2133143RGRGRGRGRGR
3135144RGRGRGRGRG
4135145RGRGRGRGRGR
5137146RGRGRGRGRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.19e-62NF-YC family protein