PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027082074.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | NF-YC | ||||||||
Protein Properties | Length: 279aa MW: 30824.3 Da PI: 4.8839 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 59.2 | 8.6e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +P l+sk+ elf+ +l r++ + + +t++ ++++v++ ++fdfl div r XP_027082074.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKSLELFLQDLCDRTYEITLKRGAKTVNSLHLKQCVQSFNVFDFLRDIVSR 86 5789**************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKSLE LFLQDLCDRT YEITLKRGAK 60 TVNSLHLKQC VQSFNVFDFL RDIVSRVPDL GGSEAAAEGS SARKRKAIED EGNDSDNEAK 120 KSHVSETGHT SGRGRGRGRG RGRGRANRTL EKESISQCEK YEDDLDISLQ NGDKKSINIK 180 RMDNGANPDD TKISLVAQNA EAPVRNFDLN VDLNENADSG AIPAGTPSTS SAKPPMEVRP 240 EEYPGWSLAD MESMAIDPVQ LAKLNQRIEE EEEDYDEEG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 142 | RGRGRGRGRG |
2 | 133 | 143 | RGRGRGRGRGR |
3 | 135 | 144 | RGRGRGRGRG |
4 | 135 | 145 | RGRGRGRGRGR |
5 | 137 | 146 | RGRGRGRGRG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 9e-62 | NF-YC family protein |