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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_027082048.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 321aa MW: 35462.9 Da PI: 5.2244 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 52.9 | 8e-17 | 54 | 128 | 24 | 98 |
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
arikki++adedv +i+ +P l+sk+ elf+ +l r++ + + +t++ ++++v++ ++fdfl div r
XP_027082048.1 54 ARIKKIMQADEDVGKIAMAVPLLVSKSLELFLQDLCDRTYEITLKRGAKTVNSLHLKQCVQSFNVFDFLRDIVSR 128
8***********************************************************************987 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 321 aa Download sequence |
MRKKLDTRFP AGAGEWRDYC FCKLKALAGW CLIFGAVEIG LPKYSGCQRL GFKARIKKIM 60 QADEDVGKIA MAVPLLVSKS LELFLQDLCD RTYEITLKRG AKTVNSLHLK QCVQSFNVFD 120 FLRDIVSRVP DLGGSEAAAE GSSARKRKAI EDEGNDSDNE AKKSHVSETG HTSGRGRGRG 180 RGRGRGRANR TLEKESISQC EKYEDDLDIS LQNGDKKSIN IKRMDNGANP DDTKISLVAQ 240 NAEAPVRNFD LNVDLNENAD SGAIPAGTPS TSSAKPPMEV RPEEYPGWSL ADMESMAIDP 300 VQLAKLNQRI EEEEEDYDEE G |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 175 | 184 | RGRGRGRGRG |
| 2 | 175 | 185 | RGRGRGRGRGR |
| 3 | 177 | 186 | RGRGRGRGRG |
| 4 | 177 | 187 | RGRGRGRGRGR |
| 5 | 179 | 188 | RGRGRGRGRG |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G12480.1 | 1e-52 | NF-YC family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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