PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027082046.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 512aa    MW: 56341.5 Da    PI: 7.137
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027082046.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.91.5e-31132236199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_027082046.1 132 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGElGK 226
                     89***************************966778999*************************************************66699999 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ ++r+
  XP_027082046.1 227 DRLFIDWRRR 236
                     9999999997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    
MNFMAPRQPG GGGGYYEEDS SRATRPFSQP SSAAAATPQH HHHQYLQQRD LLVPPSYNHH  60
QPRGPWDDRR VSFRGYSCGG ASQLDLMAMD SSSSPTTNGS SCSNIVEDAD EPRVGGGNTT  120
SASLIIEREH MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSTNEKGLL LNFEDRNGKP  180
WRFRYSYWNS SQSYVMTKGW SRFVKEKKLD AGDIVSFQRG VGELGKDRLF IDWRRRPDAP  240
DHPQLPPSMS TASFSQLLPH HQYSFRHPWN HPFYLQHHQQ QQNPRDHYQL LQLNNAATGV  300
GINNNPNPSH PHHLSNNYAY GNVMTGNPCS GPFIYLRSAA AARPHPVNLG IGTVQMVQKG  360
GGGSVGLNPE EVMVEEGGEG EEPMVFESVP LVQGKAAAKR LRLFGVNMDC PISESSSEDQ  420
EDDNCDILVL PSTAVAHPTM PSQFPHLCSS PPPPPPASSS SSSSSSSSST CPLQLRPYNY  480
ASRPPLHTMP SNNKSSSSDS KGKASMSLDL DI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-70B3 family protein