PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027081920.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family LSD
Protein Properties Length: 146aa    MW: 15190.8 Da    PI: 7.9177
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027081920.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.32.6e-132852125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr+lL YP GA+sV+Ca+C++V
  XP_027081920.1 28 CSGCRNLLVYPVGATSVCCAVCNAV 52
                    ************************9 PP

2zf-LSD146.55.9e-156892125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggC+tlL+Y rGA+sV+C++C+t+
  XP_027081920.1 68 CGGCHTLLMYIRGATSVQCSCCHTI 92
                    ***********************97 PP

3zf-LSD141.91.7e-13106130125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Cr lL+Y +GA+sV+Ca+C++V
  XP_027081920.1 106 CGNCRMLLMYQYGARSVKCAVCNFV 130
                     ***********************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    
MPVPLAPYPT PPVPFTPPAT GAQSQLVCSG CRNLLVYPVG ATSVCCAVCN AVTAVPPPAG  60
TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TINLAMEANQ VAHVNCGNCR MLLMYQYGAR  120
SVKCAVCNFV TSIGASASTI EQKFNS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.33e-65LSD family protein