PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027081720.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 783aa MW: 89010 Da PI: 6.1219

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027081720.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.9	5.4e-21	97	185	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fY++YA+ GF+vrk +k++ n+ i ++vCs+eg++e++ + + +r ++++tr+gC a++++k + +gk++vt + +eHnHel+ XP_027081720.1 97 FYETYANLNGFTVRKVDTKRK--NNVIRYTRWVCSREGFSENRWANnLDGKRDPKSVTRIGCLASFRIKHDFkSGKYVVTGFIKEHNHELM 185 9************998776..8889**********998774678899**************99**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 783 aa Download sequence
MDATARSACQ RVSIDLSVDG IGDSDSGEGN RRSVEDNEVN IDADNNHGST SGGAELDTRN 60 DNTREVSWVE LDKGLEDLTE KEVFGLKFDS DEEAGIFYET YANLNGFTVR KVDTKRKNNV 120 IRYTRWVCSR EGFSENRWAN NLDGKRDPKS VTRIGCLASF RIKHDFKSGK YVVTGFIKEH 180 NHELMAPRVL PCLQPKKRAR RVAGDVGFTR KDRERASTSS DIADGDTRCV LTQCVLAWLC 240 AKSDYDPGLF YKYDVDEENK LCRIFWADSK SRADYAFFGD VLALNTKFRK NAYGKPFIIL 300 AGLNNHDQTI VFACALLGDE TAETYVWLLE TFLEAMNDKA PVSVITDGSK AIEEALEKTF 360 PMSKHRICRW HLHKDAVSNA SDSSFGPDFK KCMEENWSPE EFEVAWMELL EKYGLQGHPW 420 FEETYSRRTK WAEAYLREHF FAGLNSILGH GMNTYFTRFL KVRLKLHEFV RYYDKALVCL 480 REEEAKADTE SESTYPAFCT VLRDLEMHAA DVFTKSIFFK VREQIMRDPM LILSSKEYLD 540 DEACWVYSFS EYTKPDMVWK VHYHPSNQSL TCSCFKLVTD GVPCCHMISV MKAEHLREFP 600 RCCINKRWTK CARSKIASSI DIQALNMATQ VARFRVLTSA CSEMNYYASQ TVQGFNETRN 660 LISKMMSHVK PIHTSKGDVD EPAPEVSQDA DGSSTRSGMH DPRSTNSNGQ CDSSAVGTSR 720 PGDWGQSRST SHDQFLFQLL HLNHGSQRPE GTGTTEDGLK CIPNGNLPEM PSLPLNLMWE 780 DSD

Sequence ? help Back to Top

Protein Sequence Length: 783 aa Download sequence

MDATARSACQ RVSIDLSVDG IGDSDSGEGN RRSVEDNEVN IDADNNHGST SGGAELDTRN  60
DNTREVSWVE LDKGLEDLTE KEVFGLKFDS DEEAGIFYET YANLNGFTVR KVDTKRKNNV  120
IRYTRWVCSR EGFSENRWAN NLDGKRDPKS VTRIGCLASF RIKHDFKSGK YVVTGFIKEH  180
NHELMAPRVL PCLQPKKRAR RVAGDVGFTR KDRERASTSS DIADGDTRCV LTQCVLAWLC  240
AKSDYDPGLF YKYDVDEENK LCRIFWADSK SRADYAFFGD VLALNTKFRK NAYGKPFIIL  300
AGLNNHDQTI VFACALLGDE TAETYVWLLE TFLEAMNDKA PVSVITDGSK AIEEALEKTF  360
PMSKHRICRW HLHKDAVSNA SDSSFGPDFK KCMEENWSPE EFEVAWMELL EKYGLQGHPW  420
FEETYSRRTK WAEAYLREHF FAGLNSILGH GMNTYFTRFL KVRLKLHEFV RYYDKALVCL  480
REEEAKADTE SESTYPAFCT VLRDLEMHAA DVFTKSIFFK VREQIMRDPM LILSSKEYLD  540
DEACWVYSFS EYTKPDMVWK VHYHPSNQSL TCSCFKLVTD GVPCCHMISV MKAEHLREFP  600
RCCINKRWTK CARSKIASSI DIQALNMATQ VARFRVLTSA CSEMNYYASQ TVQGFNETRN  660
LISKMMSHVK PIHTSKGDVD EPAPEVSQDA DGSSTRSGMH DPRSTNSNGQ CDSSAVGTSR  720
PGDWGQSRST SHDQFLFQLL HLNHGSQRPE GTGTTEDGLK CIPNGNLPEM PSLPLNLMWE  780
DSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-90	FAR1 family protein