PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027081684.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 350aa MW: 38363.5 Da PI: 7.064 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.9 | 1.1e-10 | 102 | 126 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC+ f++ GtC+y +C+FaH+ XP_027081684.1 102 YKTKLCCKFRA-GTCPYVTNCNFAHS 126 9**********.*************8 PP | |||||||
2 | zf-CCCH | 18.6 | 3.3e-06 | 173 | 198 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_027081684.1 173 YKGRHCKKFYTEEGCPYGDNCTFLHD 198 78888********************7 PP | |||||||
3 | zf-CCCH | 42.3 | 1.2e-13 | 233 | 258 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_027081684.1 233 WKTRICNKWELTGYCPFGSKCHFAHG 258 8************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence |
MDYHRDSGFS SGNVVQVLSG SGNGVAGNWG RGSVDQAAWA TEDDYRVWNR ETSVEINSNS 60 NYDGRQSQSF SGGEPPNKKS RSSQMEDLTA SSRSKAIGKM FYKTKLCCKF RAGTCPYVTN 120 CNFAHSIEEL RKPPPNWQEI VAAHEEERAA SMEPREEFQI PSLVGGAESQ RSYKGRHCKK 180 FYTEEGCPYG DNCTFLHDEQ SKARESEAIS LGPGMGGGYA GNPTGTNLKP SNWKTRICNK 240 WELTGYCPFG SKCHFAHGAE ELHQFGGGPV ESEVPTTPSD TKQVAVPSKV VADAVVGSVT 300 PVPHSDSYHV GVPAQKLSNV IQKTGQKPHL KWKGPDKISK IYGDWIDDLE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-124 | C3H family protein |