PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027081228.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GATA

Protein Properties

Length: 540aa MW: 59679.9 Da PI: 6.7115

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027081228.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.9	4.3e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_027081228.1 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 **************88888*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RAEPDDLEDY 60 RNSRVKNISV KNKEAKVLKR KPNHEIEVGA FSPDYNHGFR KGLDEDTSNR SSSGSAISNS 120 ESCAQFGSAD ASDLTGPAQP MVWDSMVPSR KRTCVTRAKP SPVEKLTKDL YTILHEHSPY 180 FSGSSEEDLL FESDKPMVSV EIGHGSVLIR HPSSIAREEE SEASSLSVDN KLHPVNEAYS 240 RLTTFSVHTD NKGVNLPNPG AEKVKKPTGQ GGEQEQIKWD KDQLEKLQLL GHHSSPLCYV 300 DLKDLLNFGE FVSCLTKEEH QQLLKYLPSI DTSGPPESLR NMFDSIQFEE NLSSFQKLLA 360 EGVFDNTLSG VKTEDCRTLK KFVLCNLTKS KWVGQYNLLK DVKCRSSISM SEVAGEFDAV 420 ATGHSVNAKR SRDGQYQKFP AKTIMKSPKR VMMKASYEHR EVTDNDGSCF SPRSLFALPA 480 DNSSLVLDSF NTAESSDQDL LLDVPSNSSF PQAELLLPTS SFGAQASTCS SSGYPQLLHP

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RAEPDDLEDY  60
RNSRVKNISV KNKEAKVLKR KPNHEIEVGA FSPDYNHGFR KGLDEDTSNR SSSGSAISNS  120
ESCAQFGSAD ASDLTGPAQP MVWDSMVPSR KRTCVTRAKP SPVEKLTKDL YTILHEHSPY  180
FSGSSEEDLL FESDKPMVSV EIGHGSVLIR HPSSIAREEE SEASSLSVDN KLHPVNEAYS  240
RLTTFSVHTD NKGVNLPNPG AEKVKKPTGQ GGEQEQIKWD KDQLEKLQLL GHHSSPLCYV  300
DLKDLLNFGE FVSCLTKEEH QQLLKYLPSI DTSGPPESLR NMFDSIQFEE NLSSFQKLLA  360
EGVFDNTLSG VKTEDCRTLK KFVLCNLTKS KWVGQYNLLK DVKCRSSISM SEVAGEFDAV  420
ATGHSVNAKR SRDGQYQKFP AKTIMKSPKR VMMKASYEHR EVTDNDGSCF SPRSLFALPA  480
DNSSLVLDSF NTAESSDQDL LLDVPSNSSF PQAELLLPTS SFGAQASTCS SSGYPQLLHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-148	GATA family protein